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Related Experiment Videos

CATMA: a complete Arabidopsis GST database.

Mark L Crowe1, Carine Serizet, Vincent Thareau

  • 1The John Innes Centre, Norwich Research Park, Colney, Norwich NR4 7UH, UK. mark.crowe@bbsrc.ac.uk

Nucleic Acids Research
|January 10, 2003
PubMed
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The Complete Arabidopsis Transcriptome Micro Array (CATMA) database offers gene sequences and models for over 70% of Arabidopsis thaliana genes. This resource aids genomic research through its comprehensive and searchable data.

Area of Science:

  • Genomics
  • Bioinformatics
  • Plant Science

Background:

  • The Arabidopsis thaliana genome is extensively studied.
  • Comprehensive genomic data resources are crucial for research.
  • Existing databases may lack specific features or coverage.

Purpose of the Study:

  • To present the Complete Arabidopsis Transcriptome Micro Array (CATMA) database.
  • To provide access to gene sequence tag (GST) and gene model sequences for Arabidopsis thaliana.
  • To offer a searchable platform for genomic information.

Main Methods:

  • Development of a comprehensive database integrating GST and gene model sequences.
  • Genome reannotation using uniform parameters for accuracy.
  • Implementation of search functionalities including sequence name, homology, and SQL queries.

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Main Results:

  • CATMA database covers over 70% of predicted Arabidopsis thaliana genes.
  • All GST sequences are specific to their target genes.
  • Gene models are derived from a complete, uniformly parameterized genome reannotation.

Conclusions:

  • The CATMA database serves as a valuable, integrated resource for Arabidopsis thaliana research.
  • Its specific GSTs and reliable gene models enhance data accuracy.
  • The database is accessible online, facilitating broader scientific use.