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MOsDB: an integrated information resource for rice genomics.

Wojciech M Karlowski1, Heiko Schoof, Vijayalakshmi Janakiraman

  • 1MIPS/Institute for Bioinformatics, GSF National Research Center for Environment and Health, Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany.

Nucleic Acids Research
|January 10, 2003
PubMed
Summary

The MIPS Rice (Oryza sativa) database (MOsDB) offers integrated genomic data for rice, a vital food crop and model organism. It provides comprehensive gene annotation and analysis data for both indica and japonica rice varieties.

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Area of Science:

  • Plant genomics
  • Bioinformatics
  • Agricultural science

Background:

  • Rice (Oryza sativa) is a globally significant food crop and a key model organism for cereal research.
  • Genomic information is crucial for understanding rice biology and improving crop yields.

Purpose of the Study:

  • To present the MIPS Rice (Oryza sativa) database (MOsDB) as a centralized resource for rice genome information.
  • To integrate and provide access to diverse genomic data for both indica and japonica rice subspecies.

Main Methods:

  • Integration of publicly available genomic sequences for O. sativa L. ssp. indica and O. sativa L. ssp. japonica.
  • Development of a web interface with search and browsing functionalities for database content.

Main Results:

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  • MOsDB provides updated rice genome sequence information.
  • The database includes integrated analysis data, such as internal and external annotations.
  • It offers complex characterization for all annotated rice genes.

Conclusions:

  • MOsDB serves as a comprehensive and continuously expanding resource for rice genome research.
  • The database facilitates access to crucial genomic data, supporting analysis and discovery in rice biology.