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Updated: Feb 18, 2026

Acquisition of Resting-State Functional Magnetic Resonance Imaging Data in the Rat
Published on: August 28, 2021
Temperature control of respiring rat brain slices during high field NMR spectroscopy
Lawrence Litt1, Kiyoshi Hirai, Vladimir J Basus
1Department of Anesthesia, University of California, San Francisco, CA 94143, USA. llitt@itsa.ucsf.edu
Abstract:
Advancing methodologies in high field multinuclear (1)H/(31)P NMR spectroscopy continue to improve the chemical shift precision and signal amplitude sensitivity attainable in ex vivo NMR studies of respiring tissues. Thus it was straightforward in a 14.1-Tesla (600-MHz) system to use the well-known temperature dependence of the chemical shift of water protons to implement a protocol addition in our brain slice studies (350 microm thick, 15 slices per 8-mm NMR tube) of hypoxia. The protocol addition provides for accurate, continuous measurements of brain tissue temperature, a very important variable in studies of oxygen deprivation and metabolism. The basic protocol for loading and maintaining superfused respiring neonatal cerebrocortical slices, similar to protocols described previously by us and others, permitted rapid detection of glycolytic and TCA cycle activity. All brain slices have an 'injury layer' approximately 50-microm thick from mechanical shear. In our protocol the injury layer is confined to one side of the slice, and appears to contribute minimally to NMR spectra.

