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Updated: Sep 27, 2026

Mapping the Structure-Function Relationships of Disordered Oncogenic Transcription Factors Using Transcriptomic Analysis
Published on: June 27, 2020
Transcription factor IID recruitment and Sp1 activation. Dual function of TAF1 in cyclin D1 transcription
1University of Washington, Department of Pharmacology, School of Medicine, Health Sciences Center, Box 357280, Seattle, Washington 98195-7280, USA.
Abstract:
Cyclin D1 is an oncogene that regulates progression through the G(1) phase of the cell cycle. A temperature-sensitive missense mutation in the transcription factor TAF1/TAF(II)250 induces the mutant ts13 cells to arrest in late G(1) by decreasing transcription of cell cycle regulators, including cyclin D1. Here we provide evidence that TAF1 serves two independent functions, one at the core promoter and one at the upstream activating Sp1 sites of the cyclin D1 gene. Using in vivo genomic footprinting, we have identified protein-DNA interactions within the cyclin D1 core promoter that are disrupted upon inactivation of TAF1 in ts13 cells. This 33-bp segment, which we termed the TAF1-dependent element 1 (TDE1), contains an initiation site that displays homology to the consensus motif and is sufficient to confer a requirement for TAF1 function. Electrophoretic mobility shift assays reveal that binding of ts13-TAF1-containing TFIID complexes to the cyclin D1 TDE1 occurs at 25 degrees C but not at 37 degrees C in vitro and involves the initiator element. Temperature-dependent DNA binding activity is also observed for TAF1-TAF2 heterodimers assembled with the ts13 mutant but not the wild-type TAF1 protein. These data suggest that a function of TAF is required for the interaction of TFIID with the cyclin D1 initiator. Our finding that recruitment of TFIID, by insertion of a TBP binding site upstream of the TDE1, restores basal but not activated transcription supports the model that TAF1 carries out two independent functions at the cyclin D1 promoter.
Insights
The transcription factor TAF1 (TBP-associated factor 1) has two distinct roles in regulating cyclin D1 gene transcription. A temperature-sensitive mutation in TAF1 impairs its ability to bind DNA, affecting cell cycle progression.
Area of Science:
- Molecular Biology
- Cell Cycle Regulation
- Gene Transcription
Background:
- Cyclin D1 is a crucial oncogene controlling G1 phase progression.
- Mutant ts13 cells, with a temperature-sensitive TAF1 mutation, arrest in late G1.
- This arrest is linked to reduced transcription of cell cycle regulators like cyclin D1.
Purpose of the Study:
- To investigate the independent functions of TAF1 at the cyclin D1 gene promoter.
- To identify specific DNA elements and protein-DNA interactions regulated by TAF1.
- To elucidate the mechanism by which TAF1 mutations affect cyclin D1 transcription.
Main Methods:
- In vivo genomic footprinting to identify TAF1-dependent DNA interactions.
- Electrophoretic mobility shift assays (EMSA) to analyze TAF1-TFIID complex binding.
- Site-directed mutagenesis and reporter gene assays to assess functional elements.
Main Results:
- A TAF1-dependent element (TDE1) in the cyclin D1 core promoter was identified.
- The ts13 TAF1 mutation disrupts TAF1 binding to TDE1 at the restrictive temperature (37°C).
- TAF1-TAF2 heterodimers show temperature-dependent DNA binding activity with the mutant protein.
Conclusions:
- TAF1 plays dual roles: one at the core promoter (TDE1) and another at upstream Sp1 sites.
- TAF1 is essential for TFIID complex interaction with the cyclin D1 initiator element.
- The findings support a model where TAF1 mediates distinct functions for basal and activated transcription.
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