Unsupervised continuous sleep analysis

One aim of the EU-funded project SIESTA was to develop a new way of describing the human sleep-wake continuum with high temporal resolution, and independent of subjective rules, to serve as an alternative to traditional sleep scoring. Here, we report new findings obtained with a fully automatic, probabilistic sleep-analyzer using Hidden Markov Models (HMMs) based on data from a single electroencephalogram (EEG) channel. HMMs allow the analysis of non-stationary time series by modeling both the probability density functions of locally stationary data and the transition probabilities between these stable states. In the context of sleep analysis, the locally stable states can be thought of as sleep stages. The sleep-wake continuum was modeled as a mixture of three different processes by defining a three-state Gaussian Observation HMM (GOHMM). No class information from human scorers was used to train the model. The probabilities of being in any of the three states at each point in time roughly indicate the amount of wakefulness, deep sleep and rapid-eye-movement (REM) sleep with a one-second time resolution. Although it was not the aim to replicate the traditional Rechtschaffen and Kales (R&K) scoring, pseudo R&K hypnograms were constructed from the probability plots in order to compare the analyzer results with classical sleep stages by human experts. We expected that the analyzer would be able to classify data correctly from the "cornerstones" of human sleep (wakefulness, deep sleep, and REM sleep). Contrary to our previous efforts, we trained the HMMs on data from two different sleep laboratories separately, instead of generalizing data from diverse laboratories. While these stages could be detected with an accuracy of around 80% at the sleep laboratory for which we already had achieved the best results, there was no improvement from previous results by the training of a separate model in the other laboratory. This finding indicates clear laboratory effects in the signal characteristics, probably due to differences in hardware and filter settings. The presented approach, going beyond a mere replication of the traditional R&K standard, offers a continuous description of human sleep which is based on probabilistic principles. It provides a second-by-second quantification of the sleep-wake continuum and captures, although being entirely data-driven instead of rule-based, the three main processes in human sleep: wakefulness, deep sleep and REM sleep.