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cMap: the comparative genetic map viewer.

Z Fang1, M Polacco, S Chen

  • 1Department of Agronomy, University of Missouri, Columbia, MO 65211, USA. fangz@missouri.edu

Bioinformatics (Oxford, England)
|February 14, 2003
PubMed
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The cMap tool offers a graphical utility for comparing genetic maps across species. It facilitates the comparison of maize, rice, and sorghum genetic maps, featuring over 13,800 loci.

Area of Science:

  • Plant genetics
  • Bioinformatics
  • Comparative genomics

Background:

  • Genetic map comparison is crucial for understanding genome evolution and synteny.
  • Existing tools may lack comprehensive comparative capabilities or user-friendly interfaces.

Purpose of the Study:

  • To introduce cMap, a web-based graphical utility for comparative genetic mapping.
  • To provide a platform for comparing genetic maps within and between plant species.

Main Methods:

  • Development of a relational database environment for genetic map data.
  • Implementation of a search capability for accessing and comparing genetic maps.
  • Dynamic linking to data resources and shared loci lists.

Main Results:

Related Experiment Videos

  • cMap provides a user-friendly interface for comparing genetic maps.
  • Currently supports comparative mapping for maize, rice, and sorghum.
  • Includes over 13,800 distinct loci for comparison.

Conclusions:

  • cMap enhances the ability to perform comparative genetic analyses across key crop species.
  • Facilitates research in plant genomics and genetic resource discovery.
  • Accessible online for researchers worldwide.