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Updated: Sep 27, 2026

Forward Genetic Approaches in Chlamydia trachomatis
Published on: October 23, 2013
Polymorphic membrane protein H has evolved in parallel with the three disease-causing groups of Chlamydia trachomatis
Diane R Stothard1, Gregory A Toth, Byron E Batteiger
1The Department of Medicine, Division of Infectious Diseases, Indiana University School of Medicine, Indianapolis, Indiana 46202, USA. dstothar@iupui.edu
Abstract:
Chlamydia trachomatis is a human pathogen causing trachoma, urogenital disease, and lymphogranuloma venereum (LGV). A family of nine polymorphic membrane protein genes (pmpA to pmpI), resembling autotransporter proteins, has recently been discovered in C. trachomatis. pmp genes are large and predicted to be outer membrane proteins. We hypothesized that they would contain useful nucleotide sequence variability for epidemiologic studies. Since sequence information is available only for serovars D and L2, we sought to determine the amount of diversity within an individual pmp gene among serovars. We used restriction fragment length polymorphism (RFLP) analysis as a primary screen to assess the amount of sequence divergence among the pmp genes for serovars A to L3 of C. trachomatis. RFLP analysis showed little variation for some of the genes, such as pmpA, but substantial variation in others, such as pmpI. pmpH and pmpE yielded RFLP patterns that clustered the 15 serovars into ocular, urogenital, and LGV groups, and both proteins have been localized to the outer membrane. Therefore, we chose to sequence pmpE, pmpH, and pmpI from each of the 15 serovars. Evolutionary analysis showed three distinct divergence patterns. PmpI was least variable, resulting in an ambiguous evolutionary pattern. PmpE showed a high degree of diversity in the ocular strains compared to the other strains. Finally, the evolution of PmpH shows three groups that reflect disease groups, suggesting this protein may play a role in pathogenesis.
Insights
Polymorphic membrane protein (pmp) genes in Chlamydia trachomatis show sequence diversity useful for epidemiology. PmpH and PmpE gene variations correlate with ocular, urogenital, and LGV disease groups.
Area of Science:
- Microbiology
- Genetics
- Epidemiology
Background:
- Chlamydia trachomatis is a significant human pathogen responsible for trachoma, urogenital infections, and lymphogranuloma venereum (LGV).
- Nine polymorphic membrane protein (pmp) genes, encoding putative outer membrane proteins, have been identified in C. trachomatis.
- Sequence variability within pmp genes is hypothesized to be valuable for epidemiological studies.
Purpose of the Study:
- To assess the sequence diversity within individual pmp genes among different serovars of C. trachomatis.
- To identify specific pmp genes that exhibit significant sequence variation relevant for epidemiological investigations.
- To explore the potential of pmp gene variability in differentiating C. trachomatis strains associated with distinct clinical manifestations.
Main Methods:
- Restriction fragment length polymorphism (RFLP) analysis was employed as an initial screening method to evaluate sequence divergence across pmp genes (pmpA-pmpI) in 15 C. trachomatis serovars (A-L3).
- Genes exhibiting substantial variation (pmpE, pmpH, pmpI) were selected for subsequent sequencing.
- Evolutionary analysis was performed on the sequenced pmp genes to understand divergence patterns.
Main Results:
- RFLP analysis revealed varying degrees of sequence divergence among pmp genes, with pmpA showing minimal variation and pmpI demonstrating substantial variation.
- pmpH and pmpE RFLP patterns successfully clustered the 15 serovars into ocular, urogenital, and LGV disease groups.
- Sequence analysis indicated that PmpI was the least variable, PmpE showed high diversity in ocular strains, and PmpH evolution reflected distinct disease groups.
Conclusions:
- The polymorphic membrane protein (pmp) genes of Chlamydia trachomatis exhibit sequence variability that can be utilized for epidemiological studies.
- The PmpH protein, in particular, demonstrates evolutionary patterns that align with disease groups, suggesting a potential role in pathogenesis.
- The findings support the use of specific pmp genes, such as pmpE and pmpH, for differentiating C. trachomatis strains and understanding their clinical associations.
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