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Updated: Jul 31, 2026

Automated 3D Optical Coherence Tomography to Elucidate Biofilm Morphogenesis Over Large Spatial Scales
Published on: August 21, 2019
Spatiotemporal analysis of optical imaging data
A Sornborger1, C Sailstad, E Kaplan
1Laboratory of Applied Mathematics, Biomathematical Sciences Division, Mt Sinai School of Medicine, One Gustave L. Levy Place, New York, NY 10029, USA. ats@camelot.mssm.edu
Abstract:
Previous methods for analyzing optical imaging data have relied heavily on temporal averaging. However, response dynamics are rich sources of information. Here, we develop and present a method that combines principal component analysis and multitaper harmonic analysis to extract the statistically significant spatial and temporal response from optical imaging data. We apply the method to both simulated data and experimental optical imaging data from the cat primary visual cortex.

