Restriction-modification system in bacteriophage MB78

Deepti Chaturvedi1, Maharani Chakravorty

  • 1Molecular Biology Unit, Institute of Medical Sciences, Banaras Hindu University, Varanasi 221005, India.

Insights

The bacteriophage MB78

Area of Science:

  • Bacteriophage biology
  • Molecular genetics
  • Bacterial defense mechanisms

Background:

  • Bacteria utilize restriction-modification (R-M) systems for defense against phage infections.
  • The virulent bacteriophage MB78 of Salmonella typhimurium harbors its own R-M system.
  • Understanding phage R-M systems offers insights into host-phage interactions.

Purpose of the Study:

  • To investigate the functional role of the putative R-M genes from bacteriophage MB78.
  • To analyze the impact of these genes on phage propagation and host cell viability.
  • To characterize the stability and expression of cloned MB78 R-M genes.

Main Methods:

  • Cloning of MB78 R-M genes in various orientations and vectors.
  • Transformation of permissive hosts with recombinant plasmids.
  • Assessing phage restriction against 9NA, MB78, and P22.
  • Evaluating transformant stability and viability under different conditions.
  • Individual cloning and analysis of restriction and modification genes.

Main Results:

  • Expression of MB78 R-M genes in a permissive host restricted growth of phages 9NA and MB78, but not P22.
  • Cloning orientation significantly impacted plasmid stability, with opposite orientations to lacZ in pUC19 yielding stable clones.
  • Transformant viability was dependent on bacterial strain, gene orientation, and growth medium.
  • Hosts expressing only the modification gene showed no phage restriction and stable transformants.
  • Hosts expressing only the restriction gene exhibited severe growth restriction and unstable, short-lived transformants.

Conclusions:

  • The MB78 R-M system confers a self-defense mechanism against specific phages.
  • The cloned restriction gene is toxic to the host, leading to instability and poor viability.
  • The MB78 R-M genes represent a novel target for studying phage-host interactions and developing new genetic tools.

Related Concept Videos

DNA Bacteriophages01:26

DNA Bacteriophages

Bacteriophages, or phages, are viruses that specifically infect bacteria, utilizing their genetic material to hijack host cellular machinery for replication. DNA bacteriophages employ single-stranded DNA (ssDNA) or double-stranded DNA (dsDNA) genomes. These phages exhibit diverse replication strategies and host interactions, influencing their ecological roles and applications in biotechnology and medicine.ssDNA BacteriophagesssDNA phages, with their small genomes, utilize unique strategies to...
CRISPR and crRNAs02:53

CRISPR and crRNAs

Bacteria and archaea are susceptible to viral infections just like eukaryotes; therefore, they have developed a unique adaptive immune system to protect themselves. Clustered regularly interspaced short palindromic repeats and CRISPR-associated proteins (CRISPR-Cas) are present in more than 45% of known bacteria and 90% of known archaea.
The CRISPR-Cas system stores a copy of foreign DNA in the host genome and uses it to identify the foreign DNA upon reinfection. CRISPR-Cas has three different...
Regulation of Bacterial Virulence01:28

Regulation of Bacterial Virulence

Pathogenic bacteria employ a range of regulatory mechanisms to modulate the expression of virulence genes in response to environmental and host-derived signals. These mechanisms ensure that virulence factors are expressed only under favorable conditions, thereby optimizing infection and survival strategies.Mechanisms of Virulence RegulationKey regulatory strategies include:Two-Component Systems: These consist of a membrane-bound sensor kinase and a cytoplasmic response regulator. Environmental...
Restriction Enzymes01:11

Restriction Enzymes

Restriction enzymes are bacterial enzymes used to cut DNA in a sequence-specific manner. To cleave DNA, they bind to specific palindromic sequences called restriction sites. Such palindromic DNA sequences or inverted repeats are commonly found in regions of functional significance, such as the origin of replication, gene operator sites, and regions containing transcription termination signals.
The host bacteria protect their own genomic DNA from these enzymes by methylating these sites. Some...
Viral Replication: Lysogenic Cycle01:16

Viral Replication: Lysogenic Cycle

The lysogenic cycle is a crucial viral replication strategy that allows bacteriophages to persist within host cells without immediately destroying them. This process is primarily observed in temperate phages, such as bacteriophage lambda (λ), which infects Escherichia coli. The cycle allows the viral genome to persist across bacterial generations while keeping host cells viable.Integration of the Viral GenomeUpon infection, bacteriophage lambda attaches to the bacterial surface and injects its...
Conservative Site-specific Recombination and Phase Variation02:53

Conservative Site-specific Recombination and Phase Variation

Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...