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Updated: Sep 26, 2026

Assessment of Open Probability of the Mitochondrial Permeability Transition Pore in the Setting of Coenzyme Q Excess
Published on: June 1, 2022
Release of pyridoxal 5'-phosphate upon unfolding of mitochondrial aspartate aminotransferase
Ting-Huai Wu1, Juan A Oses-Prieto, Ana Iriarte
1Division of Molecular Biology and Biochemistry, School of Biological Sciences, University of Missouri-Kansas City, 5007 Rockhill Rd., Kansas City, MO 64110-2499, USA.
Abstract:
Dimeric mitochondrial aspartate aminotransferase (mAAT) contains a molecule of pyridoxal 5'-phosphate (PLP) tightly attached to each of its two identical active sites. The presence of this natural reporter allows us to study separately local perturbations in the architecture of this critical region of the molecule during unfolding. Upon unfolding of the enzyme with guanidine hydrochloride (GdnHCl), the coenzyme is completely released from the active site. The transition midpoint for the dissociation of PLP is 1.4+/-0.02 M when determined by size-exclusion chromatography (SEC) and 1.6+/-0.02 M when the protein-bound PLP is estimated by electrospray mass spectrometry (ESI-MS). In both cases the transition midpoint is higher than that of inactivation (1.3+/-0.01 M). On the other hand, the midpoint of the unfolding transition obtained by monitoring changes in ellipticity at 356 nm, which reflects the asymmetric environment of the PLP cofactor at the active site, is 1.19+/-0.011 M guanidine. These results indicate that the unfolding of mAAT is a multi-step process which includes an intermediate containing bound PLP but lacking catalytic activity.
Insights
Mitochondrial aspartate aminotransferase (mAAT) unfolds in multiple steps, with pyridoxal 5'-phosphate (PLP) release occurring after catalytic inactivation, suggesting an intermediate state. This study uses PLP as a natural reporter to probe enzyme unfolding dynamics.
Area of Science:
- Biochemistry
- Enzyme kinetics
- Protein structure and dynamics
Background:
- Dimeric mitochondrial aspartate aminotransferase (mAAT) binds pyridoxal 5"-phosphate (PLP) at its active sites.
- PLP acts as a natural reporter for studying enzyme unfolding and active site perturbations.
Purpose of the Study:
- To investigate the multi-step unfolding process of mAAT using PLP as a reporter.
- To determine the order of events during unfolding, including PLP release and loss of catalytic activity.
Main Methods:
- Enzyme unfolding induced by guanidine hydrochloride (GdnHCl).
- Monitoring PLP dissociation using size-exclusion chromatography (SEC) and electrospray mass spectrometry (ESI-MS).
- Assessing enzyme inactivation and changes in the PLP active site environment via circular dichroism (ellipticity at 356 nm).
Main Results:
- PLP dissociation midpoints (1.4-1.6 M GdnHCl) were higher than the inactivation midpoint (1.3 M GdnHCl).
- The unfolding transition midpoint, reflecting the PLP active site environment, was 1.19 M GdnHCl.
- These findings indicate that PLP remains bound after catalytic inactivation during unfolding.
Conclusions:
- mAAT unfolding is a multi-step process.
- An intermediate state exists during unfolding that retains bound PLP but has lost catalytic activity.
- The study elucidates the sequential events in mAAT unfolding and the role of PLP in characterizing these transitions.
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