Mobile genetic elements and bacterial toxinoses: the superantigen-encoding pathogenicity islands of Staphylococcus aureus
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Updated: Aug 17, 2026

Methodology for the Study of Horizontal Gene Transfer in Staphylococcus aureus
Published on: March 10, 2017
1Departments of Microbiology and Medicine, Skirball Institute, New York University School of Medicine, New York, NY 10016, USA. novick@saturn.med.nyu.edu
Abstract:
It is a remarkable observation that virtually all bacterial toxins associated with specific clinical conditions (toxinoses) are encoded by mobile (and therefore variable) genetic elements. Remarkably, these rarely, if ever, carry determinants of antibiotic resistance. Examples are the toxins responsible for diphtheria, anthrax, tetanus, botulism, cholera, toxic shock, scarlet fever, exfoliative dermatitis, food poisoning, travelers' diarrhea, shigella dysentery, necrotizing pneumonia, and others. A recently discovered example of this phenomenon is the family of related staphylococcal pathogenicity islands encoding superantigens (SAgs). These are 15-20kb elements that occupy constant positions in the chromosomes of toxigenic strains, and are characterized by certain phage-related features, namely genes encoding integrases, helicases, and terminases, and the presence of flanking direct repeats. The prototype, SaPI1 of Staphylococcus aureus, encodes TSST-1 plus two newly described SAgs, SEK and SEL. Other members of the family encode enterotoxins B (SaPI3) and C (SaPI4), plus at least two other SAgs each. SaPI1 and SaPI2, also encoding TSST-1, are excised and induced to replicate by certain staphylococcal phages, and are then encapsidated at high efficiency into phage-like infectious particles with heads about 1/3 the size of the helper phage heads, commensurate with the sizes of the respective genomes. This results in transfer frequencies of the order of 10(8)/ml, and is presumably responsible for the spread of these elements as well as for their acquisition in the first place. In the absence of a helper phage, these two islands are highly stable; neither excision, loss, or transfer occurs at detectable frequency. Several general implications of this phenomenon will be discussed. One is that the determinants of these toxins have been imported from other species and therefore are not components of the basic genome of the extant producing organisms. This raises the question of the biological (adaptive?) roles of these toxins. Another is that the toxin-carrying units can spread among different (though probably related) species. An interesting question is that of the biological basis for the separation of toxin and resistance determinants.
Insights
Bacterial toxins causing diseases are encoded on mobile genetic elements, but these rarely carry antibiotic resistance genes. This suggests toxins are acquired from other species and spread independently of resistance mechanisms.
Area of Science:
- Microbiology
- Genetics
- Molecular Biology
Background:
- Most bacterial toxins linked to diseases are encoded by mobile genetic elements.
- These mobile elements rarely co-encode antibiotic resistance determinants.
- Staphylococcal pathogenicity islands (SaPIs) are a recent example, encoding superantigens (SAgs).
Purpose of the Study:
- To investigate the nature and spread of mobile genetic elements encoding bacterial toxins.
- To explore the implications of toxin gene acquisition and independent spread.
- To examine the biological basis for the separation of toxin and resistance genes.
Main Methods:
- Analysis of known bacterial toxins and their genetic elements.
- Characterization of staphylococcal pathogenicity islands (SaPIs) and their features.
- Investigation of SaPI replication and transfer mechanisms mediated by helper phages.
Main Results:
- Bacterial toxins are encoded on mobile genetic elements, distinct from antibiotic resistance genes.
- Staphylococcal pathogenicity islands (SaPIs) possess phage-related features and encode superantigens.
- SaPIs can be excised, replicated, and efficiently transferred by helper phages, facilitating their spread.
Conclusions:
- Bacterial toxin genes are likely acquired from external sources, not intrinsic to the host genome.
- The independent spread of toxin-encoding elements raises questions about their adaptive roles.
- The observed separation of toxin and resistance determinants suggests distinct evolutionary pathways.
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