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Updated: Aug 14, 2026

Atomic Force Microscopy Investigations of DNA Lesion Recognition in Nucleotide Excision Repair
Published on: May 24, 2017
Uracil recognition by archaeal family B DNA polymerases
B A Connolly1, M J Fogg, G Shuttleworth
1School of Cell and Molecular Biosciences, University of Newcastle, Newcastle upon Tyne NE2 4HH, UK. b.a.connolly@ncl.ac.uk
Abstract:
Archaeal family-B DNA polymerases possess a novel uracil-sensing mechanism. A specialized pocket scans the template, ahead of the replication fork, for the presence of uracil; on encountering this base, DNA synthesis is stalled. The structural basis for uracil recognition by polymerases is described and compared with other uracil-recognizing enzymes (uridine-triphosphate pyrophophatases and uracil-DNA glycosylases). Remarkably, protein-protein interactions between all three archaeal uracil sensors are observed; possibly the enzymes co-operate to efficiently eliminate uracil from archaeal genomes.
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