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Updated: Sep 25, 2026

Production, Crystallization and Structure Determination of C. difficile PPEP-1 via Microseeding and Zinc-SAD
Published on: December 30, 2016
The structure of endothiapepsin complexed with the gem-diol inhibitor PD-135,040 at 1.37 A
L Coates1, P T Erskine, S Mall
1School of Biological Sciences, University of Southampton, Bassett Crescent East, Southampton SO16 7PX, England. leightonc@bigfoot.com
Abstract:
The crystal structure of endothiapepsin complexed with the gem-diol inhibitor PD-135,040 has been anisotropically refined to a resolution of 1.37 A. The structure of this inhibitor complex is in agreement with previous structures of endothiapepsin gem-diol inhibitor complexes that have been used to develop proposed catalytic mechanisms. However, the increase in resolution over previous structures confirms the presence of a number of short hydrogen bonds within the active site that are likely to play an important role in the catalytic mechanism. The presence of low-barrier hydrogen bonds was indicated in a previous one-dimensional H NMR spectrum.

