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Amplification of Near Full-length HIV-1 Proviruses for Next-Generation Sequencing
Published on: October 16, 2018
HIV type 1 DNA development during long-term supervised therapy interruption
Lars E Eriksson1, Kerstin I Falk, Göran A Bratt
1Department of Virology, Swedish Institute for Infectious Disease Control, SE-171 82 Solna, Sweden. Lars.Eriksson@omv.ki.se
Abstract:
We studied the pattern of HIV-1 DNA development and the association to other HIV-related factors during long-term supervised therapy interruption (LT-STI). Fifteen patients were treated with long-time protease inhibitor-based antiretroviral therapy (PI-ART). They had HIV-1 RNA at <50 copies/ml over 33.4 (SD 9.5) months and CD4(+) cell counts of 875 (SD 415) x 10(6)/liter. A real-time polymerase chain reaction, amplifying fragments of the HIV-1 pol gene and the human albumin gene simultaneously, was used to quantify HIV-1 DNA molecules in CD4(+) cells. The quantity of HIV-1 DNA in CD4(+) cells increased during LT-STI in all 15 patients, with an average doubling time of 2 months. Tentatively, three patterns were observed: rapid initial increase with subsequent stabilizing levels, rapid continuous increase, and slow increase. The HIV-1 DNA slope was positively related to the HIV-1 RNA maximum and steady state level and the baseline HIV-1 DNA value. It was inversely related to the decrease in CD4(+) cells both before the start of PI-ART and during the LT-STI. To conclude, HIV-1 DNA persists in infected CD4(+) cells despite long-term effective PI-ART and will increase after therapy interruption. The most important clinical predictor of long-term STI failure was the rapid CD4(+) cell decline before PI-ART. In patients with a steep pre-PI-ART slope it may be prudent to continue treatment and not initiate therapy interruption.
Insights
Human immunodeficiency virus type 1 (HIV-1) DNA increases after stopping long-term supervised therapy interruption (LT-STI). Rapid CD4(+) cell decline before treatment predicts therapy interruption failure.
Area of Science:
- Virology
- Immunology
- Antiretroviral Therapy
Background:
- Long-term supervised therapy interruption (LT-STI) is a strategy explored in managing HIV-1 infection.
- Effective protease inhibitor-based antiretroviral therapy (PI-ART) suppresses HIV-1 RNA to <50 copies/ml.
- Understanding HIV-1 DNA dynamics during LT-STI is crucial for treatment strategies.
Purpose of the Study:
- To investigate the pattern of HIV-1 DNA changes during LT-STI.
- To identify associations between HIV-1 DNA development and other HIV-related factors.
- To determine predictors of LT-STI success or failure.
Main Methods:
- Quantification of HIV-1 DNA in CD4(+) cells using real-time polymerase chain reaction.
- Simultaneous amplification of HIV-1 pol gene and human albumin gene.
- Analysis of HIV-1 RNA levels, CD4(+) cell counts, and HIV-1 DNA values.
Main Results:
- HIV-1 DNA in CD4(+) cells increased in all patients during LT-STI, with an average doubling time of 2 months.
- Observed patterns included rapid initial increase, rapid continuous increase, and slow increase.
- HIV-1 DNA slope correlated positively with HIV-1 RNA levels and baseline HIV-1 DNA, and inversely with CD4(+) cell decline.
Conclusions:
- HIV-1 DNA persists in CD4(+) cells despite long-term PI-ART and increases after therapy interruption.
- Rapid CD4(+) cell decline before PI-ART is a significant predictor of LT-STI failure.
- Continuing treatment may be advisable for patients with a steep pre-PI-ART CD4(+) cell decline.
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