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Identification of patterns in biological sequences at the ALGGEN server: PROMO and MALGEN
Domènec Farré1, Romà Roset, Mario Huerta
1Computing Unit, Institut de Recerca Oncològica, L'Hospitalet, Spain.
Nucleic Acids Research
|June 26, 2003
Abstract:
In this paper we present several web-based tools to identify conserved patterns in sequences. In particular we present details on the functionality of PROMO version 2.0, a program for the prediction of transcription factor binding site in a single sequence or in a group of related sequences and, of MALGEN, a tool to visualize sequence correspondences among long DNA sequences. The web tools and associated documentation can be accessed at http://www.lsi.upc.es/~alggen (RESEARCH link).