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Sequencing Small Non-coding RNA from Formalin-fixed Tissues and Serum-derived Exosomes from Castration-resistant Prostate Cancer Patients
Published on: November 19, 2019
Aberrant methylation of the vascular endothelial growth factor receptor-1 gene in prostate cancer
Yasushi Yamada1, Masatoshi Watanabe, Mikio Yamanaka
1Second Department of Pathology, Mie University Faculty of Medicine, Tsu 514-8507, Japan.
Abstract:
Transcriptional silencing of cancer-related genes by DNA methylation is observed in various cancers. To identify genes controlled by methylation in prostate cancer, we used cDNA microarray analysis to investigate gene expression in prostate cancer cell lines LNCaP and DU145 treated with a methyltransferase inhibitor alone or together with a histone deacetylase inhibitor. We detected significant changes (3.4-5.7%) in gene expression in prostate cancer cell lines with the drug treatments. Among the affected genes, that for the vascular endothelial growth factor receptor 1 (VEGFR-1) was re-expressed in LNCaP and DU145 after the drug treatments. Bisulfite sequencing revealed the promoter and exon 1 of the VEGFR-1 to be hypermethylated in the cell lines. These results support the idea that methylation is associated with loss of VEGFR-1 mRNA expression in prostate cancer cell lines. Combined bisulfite restriction analysis (COBRA) showed the gene to be methylated in 24 (38.1%) of 63 primary local prostate cancer samples, while in all 13 benign prostate samples it was not. These findings indicate that methylation of VEGFR-1 is related with prostatic carcinogenesis.
Insights
DNA methylation silences cancer genes. In prostate cancer, VEGFR-1 gene re-expression was observed after drug treatment, indicating methylation
Area of Science:
- Oncology
- Molecular Biology
- Epigenetics
Background:
- DNA methylation is a key epigenetic mechanism involved in transcriptional gene silencing.
- Aberrant DNA methylation patterns are frequently observed in various cancers, including prostate cancer.
- Understanding methylation's role in prostate cancer is crucial for identifying novel therapeutic targets.
Purpose of the Study:
- To identify genes regulated by DNA methylation in prostate cancer.
- To investigate the role of vascular endothelial growth factor receptor 1 (VEGFR-1) methylation in prostate cancer development.
Main Methods:
- Utilized cDNA microarray analysis to assess gene expression changes in prostate cancer cell lines (LNCaP and DU145) treated with epigenetic drugs.
- Employed bisulfite sequencing and Combined Bisulfite Restriction Analysis (COBRA) to detect DNA methylation status.
- Analyzed methylation in both cell lines and primary prostate cancer samples.
Main Results:
- Drug treatments induced significant gene expression changes (3.4-5.7%) in prostate cancer cell lines.
- Vascular endothelial growth factor receptor 1 (VEGFR-1) was re-expressed following treatment, with its promoter and exon 1 found to be hypermethylated.
- VEGFR-1 promoter methylation was detected in 38.1% of primary prostate cancer samples but not in benign samples.
Conclusions:
- DNA methylation is associated with the loss of VEGFR-1 mRNA expression in prostate cancer.
- VEGFR-1 methylation is implicated in prostatic carcinogenesis, suggesting its potential as a biomarker or therapeutic target.
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