Linking genotype to phenotype: the International Rice Information System (IRIS)

Area of Science:

• Agricultural Science
• Bioinformatics
• Genomics

Background:

• The International Crop Information System (ICIS) provides a database for managing crop genetic resources and germplasm improvement.
• The International Rice Information System (IRIS) is the specialized rice implementation of ICIS.

Purpose of the Study:

• To detail the functionalities and scope of the International Rice Information System (IRIS).
• To highlight IRIS's extension for managing diverse rice genomics data.
• To inform researchers about accessing integrated rice genetic and genomic information.

Main Methods:

• Leveraging the germplasm genealogy and field data components of ICIS.
• Extending the database to incorporate diverse rice genomics data types.
• Developing stand-alone programs and WWW interfaces for data access.

Main Results:

• IRIS serves as a comprehensive database for rice genetic resources and germplasm.
• The system now handles various genomics data, including genetic mapping, genome annotation, genotype, mutant, transcriptome, proteome, and metabolomic data.
• Specialized views are available for researchers through user-friendly interfaces.

Conclusions:

• IRIS is a vital resource for managing and accessing integrated rice genetic and genomic information.
• The system facilitates research by providing diverse data types and specialized access points.
• IRIS supports advancements in rice breeding and genetic research through comprehensive data management.