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Published on: October 19, 2013
Detection and validation of single gene inversions
J F Lefebvre1, N El-Mabrouk, E Tillier
1Département d'informatique et recherche opérationnelle, Université de Montréal, CP 6128 succ. Centre-ville, Montréal, Québec H3C 3J7, Canada.
Motivation:
The biologically meaningful algorithmic study of genome rearrangement should take into account the distribution of sizes of the rearranged genomic fragments. In particular, it is important to know the prevalence of short inversions in order to understand the patterns of gene order disruption observed in comparative genomics.
Results:
We find a large excess of short inversions, especially those involving a single gene, in comparison with a random inversion model. This is demonstrated through comparison of four pairs of bacterial genomes, using a specially-designed implementation of the Hannenhalli-Pevzner theory, and validated through experimentation on pairs of random genomes matched to the real pairs.
Related Concept Videos
In-vitro Mutagenesis
Gene Conversion
Gene Duplication and Divergence
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are characterized.
In vitro Mutagenesis

