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Bugs in computational chemistry software and their consequences: the importance of the source code
François-Yves Dupradeau1, Jacques Rochette
1GRBPD, UPRES EA 2629, Faculté de Pharmacie, Université de Picardie Jules Verne, 1-3 rue des Louvels, 80037 Amiens, Cedex 1, France. fyd@u-picardie.fr
Journal of Molecular Modeling
|July 12, 2003
Summary
Computational chemistry has advanced with increased computing power and software, making it accessible to more researchers. Source code availability remains a key factor in selecting molecular modeling software.
Area of Science:
- Computational chemistry
- Molecular modeling
- Scientific software development
Background:
- Computational chemistry has emerged as a significant research field due to advancements in computing power and mathematical concepts.
- Early computational chemistry software was freely distributed, but modern programs are often copyrighted and feature user-friendly graphical interfaces.
- The increasing accessibility, or democratization, of computational chemistry tools has fueled its success and adoption by non-theoreticians.
Purpose of the Study:
- To highlight the evolution of computational chemistry software from freely distributed tools to commercially available products.
- To discuss the impact of user-friendly interfaces on the adoption of computational chemistry by a broader scientific audience.
- To emphasize the continued importance of source code availability in the selection of molecular modeling software.
Main Methods:
- Analysis of the historical development of computational chemistry software.
- Review of current trends in molecular modeling software market.
- Evaluation of software selection criteria in computational chemistry.
Main Results:
- The field of computational chemistry has experienced rapid growth, driven by technological advancements and increased accessibility.
- A competitive market for molecular modeling software has emerged, with numerous packages offering similar functionalities.
- Despite the proliferation of user-friendly software, the availability of source code is presented as a critical factor for program selection.
Conclusions:
- The democratization of computational chemistry tools has broadened its application across various chemistry-related problems.
- The commercialization of software has led to a diverse market, necessitating careful evaluation of available options.
- Source code availability is crucial for transparency, customization, and long-term viability in computational chemistry software selection.