Related Experiment Video
Updated: Sep 23, 2026

Identification of Cyclin-dependent Kinase 1 Specific Phosphorylation Sites by an In Vitro Kinase Assay
Published on: May 3, 2018
Cdk2-dependent phosphorylation of the NF-Y transcription factor and its involvement in the p53-p21 signaling pathway
Jeanho Yun1, Hee-Don Chae, Tae-Saeng Choi
1National Research Laboratory, Department of Microbiology, Dankook University College of Medicine, Cheonan, 330-714, Korea.
Abstract:
Recent studies have suggested that the NF-Y transcription factor is involved in transcription repression of the cell cycle regulatory genes in a response to p53 induction or DNA damage. Here we demonstrate the cdk2-dependent phosphorylation of NF-Y and its involvement in transcription repression by the p53-p21 signaling pathway. Cdk2 phosphorylates two serine residues near the DNA-binding domain of the YA subunit of NF-Y. Cyclin A-cdk2 appears to associate with NF-Y both in vitro and in vivo. Furthermore, YA protein is phosphorylated in parallel with a cell cycle-dependent activation of cdk2 kinase and cyclin A expression. YA phosphorylation is unnecessary for heterotrimer formation with the YB-YC dimer. However, NF-Y containing a phosphorylation-deficient mutant form of YA, YA-aa, has its DNA binding activity impaired. Consistently, YA-aa inhibits transcription activation of a NF-Y target promoter, cdc2, by cdk2. These results facilitate the elucidation of the regulatory mechanisms of cell cycle progression involving the p21-cdk2-NF-Y signaling pathway.
Insights
The transcription factor NF-Y
Area of Science:
- Molecular Biology
- Cell Biology
- Biochemistry
Background:
- Recent studies suggest NF-Y transcription factor involvement in repressing cell cycle genes after DNA damage or p53 induction.
- The precise mechanisms of NF-Y regulation in response to cellular stress remain incompletely understood.
Purpose of the Study:
- To investigate the role of cdk2-dependent phosphorylation of NF-Y in transcription repression within the p53-p21 signaling pathway.
- To elucidate the functional consequences of NF-Y phosphorylation on DNA binding and transcriptional activity.
Main Methods:
- In vitro and in vivo association studies between Cyclin A-cdk2 and NF-Y.
- Analysis of NF-Y YA subunit phosphorylation at specific serine residues.
- Use of phosphorylation-deficient NF-Y YA mutant (YA-aa) to assess DNA binding and transcriptional activity.
- Reporter assays to measure NF-Y target promoter activity (cdc2).
Main Results:
- CDK2 phosphorylates two serine residues in the YA subunit of NF-Y, near the DNA-binding domain.
- Cyclin A-cdk2 forms a complex with NF-Y both in vitro and in vivo.
- YA phosphorylation occurs concurrently with cell cycle-dependent cdk2 activation and cyclin A expression.
- Phosphorylation-deficient YA-aa mutant exhibits impaired DNA binding and inhibits cdk2-mediated transcription activation of the cdc2 promoter.
Conclusions:
- CDK2-dependent phosphorylation of the NF-Y YA subunit is a key regulatory mechanism in the p53-p21 signaling pathway.
- This phosphorylation event modulates NF-Y DNA binding and transcriptional repression of cell cycle genes.
- Findings reveal a novel signaling pathway involving p21-cdk2-NF-Y in cell cycle regulation.
Related Concept Videos
Inhibition of Cdk Activity
Inhibition of CDK Activity
Interactions Between Signaling Pathways
Convergence and divergence, and cross-talk between signaling pathways
Two distinct signaling pathways can converge on a single functional unit, which may either be a single protein or a complex of proteins. The response is either functionally distinct or synergistic between the two pathways but different from the response...
DNA Damage Can Stall the Cell Cycle
DNA Damage can Stall the Cell Cycle
Negative Regulator Molecules
