Related Experiment Video
Updated: Sep 23, 2026

Structure-Guided Design and Development of Novel Cyclophilin A Inhibitors and Ganoderiol-F Derivatives: An In-Silico Approach
Published on: June 23, 2026
Cyclophilin D as a drug target
Peter C Waldmeier1, Kaspar Zimmermann, Ting Qian
1Nervous System Research, Novartis Pharma Ltd., CH-4002 Basel, Switzerland. peter.waldmeier@pharma.novartis.com
Abstract:
The mitochondrial permeability transition (MPT) plays an important role in damage-induced cell death, and agents inhibiting the MPT may have a therapeutic potential for treating human conditions such as ischemia/reperfusion injury, trauma, and neurodegenerative diseases. The mitochondrial matrix protein, cyclophilin D (CYP D), a member of a family of highly homologous peptidylprolyl cis-trans isomerases (PPIases), plays a decisive role in MPT, being an integral constituent of the MPT pore. Other putative MPT pore proteins include the adenine nucleotide translocator (ANT) and the voltage-dependent anion channel (VDAC). In an alternative model, the MPT pore is formed by clusters of misfolded membrane proteins outlining aqueous channels that are regulated by CYP D and other chaperone-like proteins. Like cyclophilin A (CYP A) and other cyclophilin family members, CYP D is targeted by the immunosuppressant cyclosporin A (CsA). CsA is cytoprotective in many cellular and animal models, but protection may result from either inhibition of the MPT through an interaction with CYP D or inhibition of calcineurin-mediated dephosphorylation of BAD through an interaction with CYP A. The relevance of MPT inhibition by CsA for its cytoprotective effects is well documented in many cellular models. Mechanisms of action in vivo are more difficult to define, and accordingly the evidence is as yet less compelling in in vivo animal models of ischemia/reperfusion injury, trauma and neurodegenerative diseases. Notwithstanding, CYP D is a drug target of high interest. Structural considerations suggest feasibility of designing CYP D ligands without immunosuppressant properties. This is highly desirable, since they have the potential of being useful therapeutic agents in a variety of disease states. It might be a tougher challenge to obtain compounds specific for CYP D vs. other cyclophilins, and/or of small molecular weight, allowing brain penetration to make them suitable for treating neurodegenerative diseases.
Insights
Cyclophilin D (CYP D) is crucial for mitochondrial permeability transition (MPT), a key factor in cell death. Targeting CYP D offers therapeutic potential for injuries and neurodegenerative diseases.
Area of Science:
- Cell Biology
- Biochemistry
- Pharmacology
Background:
- Mitochondrial permeability transition (MPT) is implicated in cell death pathways.
- Cyclophilin D (CYP D) is a key regulator of the MPT pore.
- Inhibiting MPT shows therapeutic potential for ischemia/reperfusion injury, trauma, and neurodegenerative diseases.
Purpose of the Study:
- To investigate the role of cyclophilin D (CYP D) in mitochondrial permeability transition (MPT).
- To explore the therapeutic potential of targeting CYP D for various diseases.
- To assess the feasibility of designing non-immunosuppressant CYP D ligands.
Main Methods:
- Literature review on MPT, CYP D, and cyclosporin A (CsA) mechanisms.
- Analysis of existing cellular and animal models of MPT-related diseases.
- Structural considerations for drug design targeting CYP D.
Main Results:
- CYP D is an integral component of the MPT pore.
- Cyclosporin A (CsA) inhibits MPT via CYP D, but its cytoprotective effects can be complex.
- Evidence for CsA's in vivo efficacy in MPT-related diseases is less compelling than in vitro.
Conclusions:
- CYP D is a significant drug target for conditions involving MPT.
- Developing specific, non-immunosuppressant CYP D inhibitors is a promising therapeutic strategy.
- Designing brain-penetrant CYP D ligands presents a challenge for neurodegenerative disease treatment.
More Related Videos
08:48Development of a Backbone Cyclic Peptide Library as Potential Antiparasitic Therapeutics Using Microwave Irradiation
Published on: January 26, 2016
10:33Development of Inhibitors of Protein-protein Interactions through REPLACE: Application to the Design and Development Non-ATP Competitive CDK Inhibitors
Published on: October 26, 2015
Related Concept Videos
Pharmacogenomics: Identification of New Drug Targets
Positive Regulator Molecules
Inhibition of Cdk Activity
Anaphase Promoting Complex
Pinching-off of Coated Vesicles
M-Cdk Drives Transition Into Mitosis
Cyclin-dependent kinases, or Cdks, work in concert with cyclins to control cell cycle transitions. M-Cdk, a complex of Cdk1 bound to M cyclin, is a well-known example of this coordinated control that drives the transition from the G2 to the M phase.
M cyclin...