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A comparative proteomics resource: proteins of Arabidopsis thaliana
Wilfred W Li1, Greg B Quinn, Nickolai N Alexandrov
1San Diego Supercomputer Center, 9500 Gilman Drive, University of California San Diego, La Jolla, CA 92093-0505, USA. bourne@sdsc.edu
Genome Biology
|August 14, 2003
Abstract:
Using an integrative genome annotation pipeline (iGAP) for proteome-wide protein structure and functional domain assignment, we analyzed all the proteins of Arabidopsis thaliana. Three-dimensional structures at the level of the domain are assigned by fold recognition and threading based on a novel fold library that extends common domain classifications. iGAP is being applied to proteins from all available proteomes as part of a comparative proteomics resource. The database is accessible from the web.