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Updated: Sep 20, 2026

Super-Resolution Imaging of Bacterial Secreted Proteins Using Genetic Code Expansion
Published on: February 10, 2023
Composition, acquisition, and distribution of the Vi exopolysaccharide-encoding Salmonella enterica pathogenicity
Derek Pickard1, John Wain, Stephen Baker
1Centre for Molecular Microbiology and Infection, Department of Biological Sciences, Imperial College of Science, Technology and Medicine, Armstrong Road, London SW7 2AZ, UK. d.pickard@imperial.ac.uk
Abstract:
Vi capsular polysaccharide production is encoded by the viaB locus, which has a limited distribution in Salmonella enterica serovars. In S. enterica serovar Typhi, viaB is encoded on a 134-kb pathogenicity island known as SPI-7 that is located between partially duplicated tRNA(pheU) sites. Functional and bioinformatic analysis suggests that SPI-7 has a mosaic structure and may have evolved as a consequence of several independent insertion events. Analysis of viaB-associated DNA in Vi-positive S. enterica serovar Paratyphi C and S. enterica serovar Dublin isolates revealed the presence of similar SPI-7 islands. In S. enterica serovars Paratyphi C and Dublin, the SopE bacteriophage and a 15-kb fragment adjacent to the intact tRNA(pheU) site were absent. In S. enterica serovar Paratyphi C only, a region encoding a type IV pilus involved in the adherence of S. enterica serovar Typhi to host cells was missing. The remainder of the SPI-7 islands investigated exhibited over 99% DNA sequence identity in the three serovars. Of 30 other Salmonella serovars examined, 24 contained no insertions at the equivalent tRNA(pheU) site, 2 had a 3.7-kb insertion, and 4 showed sequence variation at the tRNA(pheU)-phoN junction, which was not analyzed further. Sequence analysis of the SPI-7 region from S. enterica serovar Typhi strain CT18 revealed significant synteny with clusters of genes from a variety of saprophytic bacteria and phytobacteria, including Pseudomonas aeruginosa and Xanthomonas axonopodis pv. citri. This analysis suggested that SPI-7 may be a mobile element, such as a conjugative transposon or an integrated plasmid remnant.
Insights
The Salmonella enterica serovar Typhi pathogenicity island SPI-7, encoding Vi capsular polysaccharide, shows structural similarities across serovars Typhi, Paratyphi C, and Dublin. This mobile genetic element may have evolved through multiple insertions.
Area of Science:
- Microbiology
- Genetics
- Genomics
Background:
- The viaB locus, responsible for Vi capsular polysaccharide production in Salmonella enterica, is not universally distributed among serovars.
- In Salmonella enterica serovar Typhi, the viaB locus resides on a large pathogenicity island, SPI-7, situated between duplicated tRNA(pheU) sites.
Purpose of the Study:
- To investigate the structure and distribution of the SPI-7 pathogenicity island in different Salmonella enterica serovars.
- To understand the evolutionary origins and potential mobility of the SPI-7 island.
Main Methods:
- Functional and bioinformatic analysis of the SPI-7 island.
- Comparative DNA sequence analysis of SPI-7 in Salmonella enterica serovars Typhi, Paratyphi C, and Dublin.
- Examination of 30 additional Salmonella serovars for insertions at the tRNA(pheU) site.
Main Results:
- SPI-7 islands in serovars Typhi, Paratyphi C, and Dublin share over 99% DNA sequence identity, with variations in specific gene content (e.g., SopE bacteriophage, type IV pilus).
- Most other Salmonella serovars examined lacked insertions at the equivalent tRNA(pheU) site, indicating limited distribution of SPI-7.
- Sequence analysis suggests SPI-7 may function as a mobile genetic element, potentially a conjugative transposon or integrated plasmid remnant, with homologous gene clusters found in other bacteria.
Conclusions:
- The SPI-7 pathogenicity island is conserved across key Salmonella serovars but exhibits variations, suggesting adaptation and evolution.
- The mosaic structure and sequence homology with other bacterial gene clusters support the hypothesis that SPI-7 is a mobile element.
- Understanding SPI-7's structure and mobility provides insights into Salmonella pathogenesis and evolution.
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