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Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins
Published on: August 9, 2019
The fragile X mental retardation protein binds and regulates a novel class of mRNAs containing U rich target
1Department of Pharmacology, Cornell University, Weill Medical College, 1300 York Ave, LC 522, 10021, New York, NY, USA
Abstract:
Fragile X syndrome is a common form of inherited mental retardation caused by the absence of the fragile X mental retardation protein (FMRP). It has been hypothesized that FMRP is involved in the processing and/or translation of mRNAs. Human and mouse target-mRNAs, containing purine quartets, have previously been identified. By using cDNA-SELEX (systematic evolution of ligands by exponential enrichment), we identified another class of human target-mRNAs which contain U rich sequences. This technique, in contrast to oligonucleotide-based SELEX, allows the identification of FMRP targets directly from mRNA pools. Many of the proteins encoded by the identified FMRP targets have been implicated in neuroplasticity. Steady state levels of target-mRNAs were unchanged in the brain of fragile X mice. However, levels of two target-encoded proteins, an L-type calcium channel subunit and MAP1B, were downregulated in specific brain regions suggesting a defect in the expression of target-encoded proteins in fragile X syndrome.
Insights
Fragile X syndrome, linked to FMRP absence, may stem from altered protein expression, not mRNA levels. Researchers identified new FMRP targets, revealing potential defects in neuroplasticity-related proteins.
Area of Science:
- Neuroscience
- Genetics
- Molecular Biology
Background:
- Fragile X syndrome (FXS) is a common inherited intellectual disability caused by the lack of fragile X mental retardation protein (FMRP).
- FMRP is thought to regulate mRNA processing and translation.
- Previous studies identified purine-rich mRNA targets of FMRP.
Purpose of the Study:
- To identify novel FMRP target mRNAs using a different approach.
- To investigate the role of FMRP in mRNA regulation beyond purine-rich sequences.
- To explore FMRP's impact on proteins involved in neuroplasticity in FXS.
Main Methods:
- Employed cDNA-systematic evolution of ligands by exponential enrichment (SELEX) to identify FMRP targets directly from mRNA pools.
- Focused on identifying U-rich sequences as a novel class of FMRP targets.
- Analyzed mRNA and protein levels in the brains of wild-type and fragile X mice.
Main Results:
- Identified a new class of human target mRNAs bound by FMRP, characterized by U-rich sequences.
- Found that steady-state mRNA levels of these targets were unchanged in the brains of fragile X mice.
- Observed downregulation of two target-encoded proteins, an L-type calcium channel subunit and MAP1B, in specific brain regions of fragile X mice.
Conclusions:
- FMRP binds to a novel class of U-rich target mRNAs.
- FXS may involve post-transcriptional dysregulation, leading to reduced protein levels of key neuroplasticity-associated factors.
- This suggests a potential mechanism for neurological deficits in fragile X syndrome.
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