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TransFLP — A Method to Genetically Modify Vibrio cholerae Based on Natural Transformation and FLP-recombination
Published on: October 8, 2012
VGJ phi, a novel filamentous phage of Vibrio cholerae, integrates into the same chromosomal site as CTX phi
Javier Campos1, Eriel Martínez, Edith Suzarte
1Departamento de Genética, Centro Nacional de Investigaciones Científicas, Havana, Cuba. javier@biocnic.edu.cu
Abstract:
We describe a novel filamentous phage, designated VGJ phi, isolated from strain SG25-1 of Vibrio cholerae O139, which infects all O1 (classical and El Tor) and O139 strains tested. The sequence of the 7,542 nucleotides of the phage genome reveals that VGJ phi has a distinctive region of 775 nucleotides and a conserved region with an overall genomic organization similar to that of previously characterized filamentous phages, such as CTX phi of V. cholerae and Ff phages of Escherichia coli. The conserved region carries 10 open reading frames (ORFs) coding for products homologous to previously reported peptides of other filamentous phages, and the distinctive region carries one ORF whose product is not homologous to any known peptide. VGJ phi, like other filamentous phages, uses a type IV pilus to infect V. cholerae; in this case, the pilus is the mannose-sensitive hemagglutinin. VGJ phi-infected V. cholerae overexpresses the product of one ORF of the phage (ORF112), which is similar to single-stranded DNA binding proteins of other filamentous phages. Once inside a cell, VGJ phi is able to integrate its genome into the same chromosomal attB site as CTX phi, entering into a lysogenic state. Additionally, we found an attP structure in VGJ phi, which is also conserved in several lysogenic filamentous phages from different bacterial hosts. Finally, since different filamentous phages seem to integrate into the bacterial dif locus by a general mechanism, we propose a model in which repeated integration events with different phages might have contributed to the evolution of the CTX chromosomal region in V. cholerae El Tor.
Insights
A new filamentous phage, VGJ phi, infects Vibrio cholerae strains and integrates into the genome. This discovery sheds light on phage-host interactions and the evolution of bacterial pathogens.
Area of Science:
- Microbiology
- Virology
- Genomics
Background:
- Vibrio cholerae causes cholera, a significant global health concern.
- Filamentous phages are important genetic elements in bacteria, influencing host evolution and virulence.
- CTX phi is a well-characterized filamentous phage of V. cholerae, known for its role in cholera toxin gene acquisition.
Purpose of the Study:
- To characterize a novel filamentous phage, VGJ phi, isolated from Vibrio cholerae O139.
- To investigate the genomic organization and infection mechanism of VGJ phi.
- To explore the integration mechanism and evolutionary implications of VGJ phi in V. cholerae.
Main Methods:
- Isolation and characterization of VGJ phi from Vibrio cholerae.
- Whole-genome sequencing of VGJ phi.
- Bioinformatic analysis of phage genome and comparison with known phages.
- Investigation of phage infection and integration mechanisms using molecular techniques.
Main Results:
- VGJ phi infects all tested O1 and O139 Vibrio cholerae strains.
- The VGJ phi genome (7,542 nucleotides) shows similarity to other filamentous phages but possesses a unique region.
- VGJ phi utilizes the mannose-sensitive hemagglutinin pilus for infection and integrates into the same chromosomal attB site as CTX phi.
- A novel ORF (ORF112) in VGJ phi encodes a protein similar to single-stranded DNA binding proteins.
Conclusions:
- VGJ phi represents a novel filamentous phage with implications for V. cholerae biology.
- The integration mechanism of VGJ phi into the V. cholerae genome provides insights into phage-host dynamics.
- The study proposes a model for the evolution of the CTX chromosomal region driven by repeated phage integration events.
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