A phylogenetic study of the gibbons (Hylobates) using DNA obtained noninvasively from hair

Variation in a 252-nucleotide segment of the cytochrome b gene from 26 gibbons is described. DNA was extracted from hair, amplified, and directly sequenced. These sequences represent seven of the nine nominal species and three of the four hylobatid subgenera. Variation was observed at 55 sites, 42 of which are phylogenetically informative. Levels of transitional and transversional divergence between the taxa are similar to those reported for homologous mtDNA sequences in other mammals. Parsimony, maximum likelihood, and bootstrap analyses (1) support some traditional phylogenetic hypotheses (monophyly of the concolor gibbons), (2) suggest previously unrecognized affinities between the lar species group and Hylobates klossi and between H. lar and H. agilis unko, and (3) show that this segment does not contain information sufficient for completely resolving gibbon relationships at the subgeneric level. The study demonstrates the great potential of noninvasive DNA sampling for phylogenetic analyses of mammals.