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Updated: Sep 13, 2026

Monitoring Stub1-Mediated Pexophagy
Published on: May 12, 2023
Modification of a ubiquitin-like protein Paz2 conducted micropexophagy through formation of a novel membrane
Hiroyuki Mukaiyama1, Misuzu Baba, Masako Osumi
1Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwake, Sakyo-ku, Kyoto 606-8502, Japan.
Abstract:
Microautophagy is a versatile process in which vacuolar or lysosomal membranes directly sequester cytosolic targets for degradation. Recent genetic evidence suggested that microautophagy uses molecular machineries essential for macroautophagy, but the details of this process are still unknown. In this study, a ubiquitin-like protein Paz2 essential for micropexophagy in the yeast Pichia pastoris has been shown to receive modification through the function of Paz8 and Gsa7, yielding a modified form Paz2-I, similar to the ubiquitin-like lipidation of Aut7 that is essential for macroautophagy in Saccharomyces cerevisiae. We identified a novel membrane structure formed after the onset of micropexophagy, which we suggest is necessary for the sequestration of peroxisomes by the vacuole. Assembly of this newly formed membrane structure, which is followed by localization of Paz2 to it, was found to require a properly functioning Paz2-modification system. We herein show that Paz2 and its modification system conduct micropexophagy through formation of the membrane structure, which explains the convergence between micropexophagy and macroautophagy with regard to de novo membrane formation.
Insights
Microautophagy utilizes a novel membrane structure and a modified protein, Paz2-I, to degrade peroxisomes. This process highlights shared machinery between microautophagy and macroautophagy.
Area of Science:
- Cellular Biology
- Molecular Biology
- Yeast Genetics
Background:
- Microautophagy involves direct sequestration of cytosolic components by vacuolar/lysosomal membranes for degradation.
- Emerging evidence suggests overlap in molecular machinery between microautophagy and macroautophagy.
- The precise mechanisms of microautophagy, particularly de novo membrane formation, remain largely undefined.
Purpose of the Study:
- To elucidate the molecular mechanisms underlying micropexophagy in Pichia pastoris.
- To investigate the role of the ubiquitin-like protein Paz2 and its modification in microautophagy.
- To identify novel structures involved in peroxisome sequestration during micropexophagy.
Main Methods:
- Genetic analysis in Pichia pastoris.
- Protein modification assays to characterize Paz2.
- Microscopy to identify and analyze novel membrane structures.
Main Results:
- Identified a modified form of Paz2 (Paz2-I) generated by Paz8 and Gsa7, analogous to Aut7 lipidation in macroautophagy.
- Discovered a novel membrane structure essential for peroxisome sequestration during micropexophagy.
- Demonstrated that the Paz2 modification system is required for the assembly of this membrane structure and Paz2 localization.
Conclusions:
- Paz2 and its modification system are crucial for micropexophagy via de novo membrane formation.
- This study reveals a convergence point between microautophagy and macroautophagy concerning membrane biogenesis.
- The findings provide a mechanistic explanation for the shared molecular machinery between these degradation pathways.
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