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Updated: Aug 30, 2026

Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins
Published on: August 9, 2019
Déjà vu all over again: FMRP binds U-rich target mRNAs
1Department of Molecular Biology, New York State Institute for Basic Research in Developmental Disabilities, 1050 Forest Hill Road, Staten Island, NY 10314, USA. rbdenman@yahoo.com
Abstract:
The fragile X mental retardation protein (FMRP) contains three RNA binding domains, two of which the KH2 domain and the C-terminal arginine-glycine-rich (RG-rich) region participate in RNA binding. Because fragile X syndrome is the leading cause of inherited mental retardation, there has been an intensive search for the messenger RNA (mRNA) targets that interact with FMRP in vivo. Initial work led to the conclusion that FMRP binds to a nucleic acid tertiary structure element called a G-quartet. Recent studies have shown that FMRP also binds mRNAs containing U-pentameric sequences. Interestingly, both motifs are mimicked by homoribopolymers (poly (rG) and poly (rU)) that were first used to determine that FMRP functioned as an RNA binding protein. The consequences of these discoveries and future areas of investigation are discussed.
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