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Updated: Aug 30, 2026

In-vitro Reconstitution of Bacterial Ubiquitination and VCP/p97-mediated Elimination
Published on: January 2, 2026
Targeting of protein ubiquitination by BTB-Cullin 3-Roc1 ubiquitin ligases
Manabu Furukawa1, Yizhou Joseph He, Christoph Borchers
1Lineberger Comprehensive Cancer Center, Department of Biochemistry and Biophysics, and Program in Molecular Biology and Biotechnology, University of North Carolina at Chapel Hill, NC 27599-7295, USA.
Abstract:
The concentrations and functions of many cellular proteins are regulated by the ubiquitin pathway. Cullin family proteins bind with the RING-finger protein Roc1 to recruit the ubiquitin-conjugating enzyme (E2) to the ubiquitin ligase complex (E3). Cul1 and Cul7, but not other cullins, bind to an adaptor protein, Skp1. Cul1 associates with one of many F-box proteins through Skp1 to assemble various SCF-Roc1 E3 ligases that each selectively ubiquitinate one or more specific substrates. Here, we show that Cul3, but not other cullins, binds directly to multiple BTB domains through a conserved amino-terminal domain. In vitro, Cul3 promoted ubiquitination of Caenorhabditis elegans MEI-1, a katanin-like protein whose degradation requires the function of both Cul3 and BTB protein MEL-26. We suggest that in vivo there exists a potentially large number of BCR3 (BTB-Cul3-Roc1) E3 ubiquitin ligases.
Insights
The study reveals Cul3 directly binds BTB domains, forming novel BCR3 ubiquitin ligases. This finding expands our understanding of protein regulation via the ubiquitin pathway.
Area of Science:
- Biochemistry
- Molecular Biology
- Cell Biology
Background:
- Protein ubiquitination is a key cellular process regulated by the ubiquitin pathway.
- Cullin proteins, Roc1, and adaptor proteins form E3 ubiquitin ligase complexes.
- Specific cullins (Cul1, Cul7) interact with Skp1 and F-box proteins to form SCF-Roc1 ligases.
Purpose of the Study:
- To investigate the binding interactions of Cul3 within the cullin family.
- To identify novel E3 ubiquitin ligase complexes involving Cul3.
- To elucidate the role of Cul3 in protein ubiquitination and degradation.
Main Methods:
- Direct binding assays to analyze Cul3-BTB domain interactions.
- In vitro ubiquitination assays using Cul3 and its substrates.
- Analysis of Caenorhabditis elegans MEI-1 ubiquitination and degradation.
Main Results:
- Cul3 directly binds to multiple BTB domains via its conserved amino-terminal domain.
- Cul3, in conjunction with BTB protein MEL-26, promotes the ubiquitination of Caenorhabditis elegans MEI-1.
- MEI-1 degradation is dependent on the function of both Cul3 and MEL-26.
Conclusions:
- Cul3 forms E3 ubiquitin ligases by binding to BTB domains.
- A diverse family of BCR3 (BTB-Cul3-Roc1) E3 ubiquitin ligases likely exists.
- This discovery provides new insights into the regulation of protein degradation through the ubiquitin-proteasome system.
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