Synthesis of 2'-O-substituted ribonucleosides
1Ribozyme Pharmaceuticals Inc., Boulder, Colorado 80301, USA. serebru@rpi.com
Nucleosides, Nucleotides & Nucleic Acids
|October 21, 2003
Summary
This study presents an efficient method for synthesizing 2'-O-substituted ribonucleosides using a novel protection strategy. The developed technique achieves high yields for various derivatives, including 2'-O-TBDMS and 2'-O-TOM protected compounds.
Area of Science:
- Organic Chemistry
- Nucleoside Chemistry
- Synthetic Chemistry
Background:
- 2"-O-substituted ribonucleosides are crucial building blocks in medicinal chemistry and molecular biology.
- Existing synthesis methods can be complex and yield-limited.
- Developing efficient and high-yielding routes is essential for broader applications.
Purpose of the Study:
- To develop an efficient and high-yielding synthetic route for 2"-O-substituted ribonucleosides.
- To explore the utility of a novel protection strategy employing a cyclic silyl group.
- To synthesize various 2"-O-substituted derivatives, including silyl ethers, methyl ethers, and allyl ethers.
Main Methods:
- Simultaneous protection of 3 ahydroxyl and 5 ahydroxyl groups using a di-t-butylsilylene moiety.
- Selective silylation or alkylation of the free 2 ahydroxyl group.
- Introduction of base protection followed by removal of the cyclic silyl protection.
Main Results:
- The developed method provides efficient synthesis of 2 ahydroxyl-O-substituted ribonucleosides.
- High yields were achieved for various derivatives, including 2 ahydroxyl-O-TBDMS, 2 ahydroxyl-O-TOM, 2 ahydroxyl-O-Me, and 2 ahydroxyl-O-allyl.
- The strategy allows for controlled introduction of diverse protecting groups.
Conclusions:
- A novel and efficient synthetic strategy for 2 ahydroxyl-O-substituted ribonucleosides has been established.
- The method offers a high-yielding and versatile approach for preparing important nucleoside derivatives.
- This work facilitates access to modified nucleosides for further research and development.
Related Concept Videos
RNA Structure
Overview
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
RNA Structure
Overview
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
Ribosomal RNA Synthesis
Ribosome synthesis is a highly complex and coordinated process involving more than 200 assembly factors. The synthesis and processing of ribosomal components occurs not only in the nucleolus but also in the nucleoplasm and the cytoplasm of eukaryotic cells.
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
RNA Structure
The basic structure of RNA consists of a string of ribonucleotides attached by phosphodiester bonds. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
Ribosomal RNA Synthesis
Ribosome synthesis is a highly complex and coordinated process involving more than 200 assembly factors. The synthesis and processing of ribosomal components occurs not only in the nucleolus but also in the nucleoplasm and the cytoplasm of eukaryotic cells.
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
Biosynthesis of Nucleic Acids
Nucleic acid biosynthesis is a fundamental biochemical process that produces the purine and pyrimidine nucleotides essential for DNA and RNA synthesis. This pathway maintains a balanced nucleotide pool, preventing imbalances that could jeopardize genetic integrity and cellular function. Given the crucial role of nucleotides, their synthesis is tightly regulated to ensure proper cellular homeostasis.Purine BiosynthesisThe biosynthesis of purine nucleotides begins with ribose-5-phosphate, a...


