Related Experiment Video
Updated: Aug 30, 2026

Photobleaching Assays (FRAP & FLIP) to Measure Chromatin Protein Dynamics in Living Embryonic Stem Cells
Published on: June 29, 2011
EWS/FLI function varies in different cellular backgrounds
Jeffrey P Zwerner1, Jennifer Guimbellot, William A May
1Department of Biochemistry and Molecular Genetics, University of Alabama at Birmingham, Birmingham, AL 35294-1150, USA.
Abstract:
EWS/FLI and other EWS/ets chimeric transcription factors play a central role in the biology of the Ewing family tumors. As with many oncogenes, EWS/FLI biologic activity can be demonstrated in a limited range of cellular contexts. To investigate the causes of this restriction, we demonstrate that two immortalized fibroblast lines resistant to EWS/FLI transformation, Rat1 and Yal7, express stable levels of EWS/FLI protein. Despite their resistance to EWS/FLI, Rat1 and Yal7 can be transformed by the potent EWS/FLI downstream mediator PDGF-C. In contrast to NIH3T3, the EWS/FLI resistant lines show no upregulation of PDGF-C in response to EWS/FLI, demonstrating differential EWS/FLI function in different cellular backgrounds. This phenomenon of differential function can also be demonstrated for several other NIH3T3 targets of EWS/FLI. Despite the correlation between anchorage-independent growth and PDGF-C induction, PDGF-C does not fully reproduce all aspects of the EWS/FLI phenotype in NIH3T3 cells. These results further point to the importance of PDGF-C in mediating EWS/FLI in vitro transformation and suggest caution in assuming that a transcription factor will produce identical effects in different cellular backgrounds.
Insights
Ewing sarcoma oncogene EWS/FLI
Area of Science:
- Oncology
- Molecular Biology
- Cell Biology
Background:
- Ewing family tumors are driven by EWS/ets chimeric transcription factors.
- The oncogenic activity of EWS/FLI is context-dependent.
- Understanding cellular context is crucial for EWS/FLI function.
Purpose of the Study:
- To investigate why EWS/FLI transformation is restricted to certain cellular contexts.
- To identify cellular factors influencing EWS/FLI oncogenic activity.
- To explore the role of downstream mediators like PDGF-C.
Main Methods:
- Utilized immortalized fibroblast cell lines (Rat1, Yal7, NIH3T3).
- Expressed EWS/FLI protein in resistant and sensitive cell lines.
- Assessed transformation potential and downstream gene expression (e.g., PDGF-C).
Main Results:
- Rat1 and Yal7 cells resist EWS/FLI transformation but can be transformed by PDGF-C.
- EWS/FLI does not upregulate PDGF-C in resistant cell lines, unlike NIH3T3 cells.
- Differential EWS/FLI target gene regulation observed across cell lines.
Conclusions:
- PDGF-C is a key mediator of EWS/FLI-induced transformation.
- Cellular background significantly influences EWS/FLI function and downstream effects.
- Caution is advised when extrapolating oncogene function across different cellular environments.
Related Concept Videos
Protein Dynamics in Living Cells
Fluorescent recovery after photobleaching (FRAP) is a fluorescent-protein-based detection technique used to quantify protein movement rates within the cell. This method exposes a small portion of the cell to an intense laser beam. The laser beam causes permanent photobleaching of the fluorophore-tagged proteins in the exposed region. As the bleached...
Position-effect Variegation

