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Published on: February 7, 2019
Formation of disulfide bond in p53 correlates with inhibition of DNA binding and tetramerization
Xiu Zhu Sun1, Christopher Vinci, Linna Makmura
1Department of Chemistry and Biochemistry, California State University, Los Angeles, CA 90032, USA.
Abstract:
The p53 tumor suppressor protein is susceptible to oxidation, which prevents it from binding to its DNA response element. The goal of the current research was to determine the nature of the cysteine residue thiol oxidation that prevents p53 from binding its DNA target and its effect on p53 structure. Recombinant p53, purified in the presence of the reducing agent dithiothreitol (DTT), contains five free thiol groups on the surface of the protein. In the absence of DTT, p53 contains only four thiol groups, indicating that an average of one surface thiol group is readily susceptible to oxidation. Sulfite-mediated disulfide bond cleavage followed by reaction with 2-nitro-5-thiosulfobenzoate showed that oxidized p53 contains a single disulfide bond per monomer. By atomic force microscopy, we determined that reduced p53 binds to a double-stranded DNA containing the p53 promoter element of the MDM2 gene. The DNA-bound reduced p53 has an average cross-sectional diameter of 8.61 nm and a height of 4.12 nm. The amount of oxidized p53 that bound to the promoter element was ninefold lower, and it has an 18% larger average cross-sectional diameter. Electromobility shift assays showed that binding of oxidized p53 to DNA was enhanced upon addition of DTT, indicating that oxidation is reversible. The possibility that oxidized p53 contained significant amounts of sulfenic (-SOH), sulfinic (-SO2H), or sulfonic acid (-SO3H) was ruled out. Gel filtration chromatography indicated that oxidation increases the percentage of p53 monomers and high-molecular-weight oligomers (>1,000 kDa) relative to tetrameric p53. Protein modeling studies suggest that a mixed disulfide glutathione adduct on Cys182 could account for the observed stoichiometry of oxidized thiols and structural changes. The glutathione adduct may prevent proper helix-helix interaction within the DNA binding domain and contribute to tetramer dissociation.
Insights
Oxidation of the p53 tumor suppressor protein, specifically a single cysteine residue, impairs its DNA binding ability and alters protein structure. This oxidation is reversible, suggesting potential therapeutic targets for p53 function.
Area of Science:
- Biochemistry
- Molecular Biology
- Structural Biology
Background:
- The p53 tumor suppressor protein plays a critical role in cellular response to DNA damage.
- Oxidation of p53, particularly its cysteine residues, can inhibit its DNA binding activity.
- Understanding the specific oxidation events and their structural consequences is crucial for p53 function.
Purpose of the Study:
- To elucidate the nature of cysteine thiol oxidation in p53 that impedes DNA binding.
- To investigate the structural alterations in p53 resulting from this oxidation.
- To determine the reversibility of p53 oxidation and its impact on protein oligomerization.
Main Methods:
- Purification of recombinant p53 with and without reducing agents (dithiothreitol).
- Sulfite-mediated disulfide bond cleavage and reaction with 2-nitro-5-thiosulfobenzoate.
- Atomic force microscopy for DNA binding and structural analysis.
- Electromobility shift assays (EMSA) to assess DNA binding.
- Gel filtration chromatography for oligomerization state analysis.
- Protein modeling studies.
Main Results:
- Oxidized p53 contains a single disulfide bond per monomer, unlike reduced p53 with five free thiols.
- Oxidized p53 exhibits significantly reduced DNA binding affinity (ninefold lower) and increased cross-sectional diameter compared to reduced p53.
- DNA binding of oxidized p53 is restored upon addition of dithiothreitol, confirming reversibility.
- Oxidation leads to increased p53 monomers and high-molecular-weight oligomers, with protein modeling suggesting a glutathione adduct on Cys182.
Conclusions:
- Oxidation of a specific cysteine residue in p53 leads to disulfide bond formation, structural changes, and impaired DNA binding.
- The observed structural changes, including potential tetramer dissociation, are linked to impaired helix-helix interactions in the DNA binding domain.
- The reversibility of p53 oxidation suggests potential modulation of its tumor suppressor activity.
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Single-Strand DNA Binding Proteins
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