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Merging Absolute and Relative Quantitative PCR Data to Quantify STAT3 Splice Variant Transcripts
Published on: October 9, 2016
Tissue-specific expression patterns of the RAGE receptor and its soluble forms--a result of regulated alternative
Claudia Schlueter1, Sven Hauke, Aljoscha M Flohr
1Center for Human Genetics, University of Bremen, Leobenerstr. ZHG, D-28359 Bremen, Germany
Abstract:
The receptor for advanced glycation end products (RAGE) is known to be causally involved in a variety of pathophysiological processes, e.g. immune/inflammatory disorders, Alzheimer disease, tumors, and abnormalities associated with diabetes as arteriosclerosis or disordered wound healing. So far, human cDNAs have been characterized encoding for the RAGE receptor and a truncated soluble form lacking the transmembrane and the cytosolic domain. The latter form represents a naturally occurring competitive inhibitor of signalling pathways induced by the membrane-standing RAGE receptor. In order to perform a relative expression analysis of both RAGE forms, an RT-PCR experiment was designed allowing the simultaneous amplification of corresponding transcripts. We were able to identify three novel human RAGE transcripts all encoding truncated soluble forms of RAGE. The relative expression ratios for the full-length RAGE transcript to the sum of its splice-variants encoding the soluble variants varied strongly among the tissues tested. Therefore, the pre-mRNA of RAGE must be subject to regulated alternative splicing activated by extracellular cues of yet unknown cellular signalling pathways. Thus, as deduced from the occurrence at the RNA level, it can be hypothesized that there is a complex RAGE regulation network involving isoforms competing for the binding of ligands.
Insights
The receptor for advanced glycation end products (RAGE) has novel soluble forms that regulate its activity. Alternative splicing of RAGE pre-mRNA generates these isoforms, suggesting a complex regulatory network.
Area of Science:
- Molecular Biology
- Cell Biology
- Immunology
Background:
- The receptor for advanced glycation end products (RAGE) is implicated in various diseases, including diabetes complications, Alzheimer's, and cancer.
- Known RAGE forms include a full-length membrane receptor and a soluble, inhibitory splice variant.
- Understanding RAGE expression is crucial for deciphering its role in disease pathogenesis.
Purpose of the Study:
- To identify and characterize novel human RAGE transcripts.
- To investigate the relative expression of full-length RAGE and its soluble splice variants.
- To explore the implications of alternative splicing in RAGE regulation.
Main Methods:
- Reverse transcription polymerase chain reaction (RT-PCR) was employed for simultaneous amplification of RAGE transcripts.
- Analysis focused on identifying and quantifying different RAGE mRNA variants.
- Tissue-specific expression levels of RAGE isoforms were compared.
Main Results:
- Three previously unidentified human RAGE transcripts encoding soluble forms were discovered.
- Significant variations in the expression ratios between full-length RAGE and soluble variants were observed across different tissues.
- These findings indicate tissue-specific regulation of RAGE alternative splicing.
Conclusions:
- The pre-mRNA of RAGE undergoes regulated alternative splicing, likely influenced by extracellular signals.
- A complex regulatory network involving competing RAGE isoforms for ligand binding is hypothesized.
- This discovery sheds light on the intricate control mechanisms of RAGE signaling in health and disease.
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