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Detection of Horizontal Gene Transfer Mediated by Natural Conjugative Plasmids in E. coli
Published on: March 24, 2023
Molecular structure and evolution of the conjugative multiresistance plasmid pRE25 of Enterococcus faecalis isolated
Michael Teuber1, Franziska Schwarz, Vincent Perreten
1Laboratory of Food Microbiology, ETH Zurich, Zurich CH-8092, Switzerland. teuber@ilw.agrl.ethz.ch
Abstract:
Plasmid pRE25 from Enterococcus faecalis transfers resistances against kanamycin, neomycin, streptomycin, clindamycin, lincomycin, azithromycin, clarithromycin, erythromycin, roxithromycin, tylosin, chloramphenicol, and nourseothricin sulfate by conjugation in vitro to E. faecalis JH2-2, Lactococcus lactis Bu2, and Listeria innocua L19. Its nucleotide sequence of 50237 base pairs represents the largest, fully sequenced conjugative multiresistance plasmid of enterococci (Plasmid 46 (2001) 170). The gene for chloramphenicol resistance (cat) was identified as an acetyltransferase identical to the one of plasmid pIP501 of Streptococcus agalactiae. Erythromycin resistance is due to a 23S ribosomal RNA methyl transferase, again as found in pIP501 (ermB). The aminoglycoside resistance genes are packed in tandem as in transposon Tn5405 of Staphylococcus aureus: an aminoglycoside 6-adenyltransferase, a streptothricin acetyl transferase, and an aminoglycoside phosphotransferase.). Identical resistance genes are known from pathogens like Streptococcus pyogenes, S. agalactiae, S. aureus, Campylobacter coli, Clostridium perfringens, and Clostridium difficile. pRE25 is composed of a 30.5-kbp segment almost identical to pIP501. Of the 15 genes involved in conjugative transfer, 10 codes for putative transmembrane proteins (e.g. trsB, traC, trsF, trsJ, and trsL). The enterococcal part is joined into the pIP501 part by insertion elements IS1216V of E. faecium Tn1545 (three copies), and homologs of IS1062 (E. faecalis) and IS1485 (E. faecium). pRE25 demonstrates that enterococci from fermented food do participate in the molecular communication between Gram-positive and Gram-negative bacteria of the human and animal microflora.
Insights
The largest sequenced enterococcal plasmid, pRE25, transfers multiple antibiotic resistances via conjugation. This study reveals its genetic makeup and its role in inter-bacterial communication within the gut microbiome.
Area of Science:
- Molecular Biology
- Microbiology
- Genetics
Background:
- Enterococci are significant in human and animal microbiomes, and their plasmids can carry antibiotic resistance genes.
- Conjugative plasmids facilitate the transfer of genetic material, including resistance determinants, between bacteria.
- Understanding plasmid structure and function is crucial for combating antibiotic resistance.
Purpose of the Study:
- To characterize the novel conjugative multiresistance plasmid pRE25 from Enterococcus faecalis.
- To determine the genetic basis of antibiotic resistance conferred by pRE25.
- To investigate the role of pRE25 in inter-species bacterial communication.
Main Methods:
- Conjugation experiments were performed in vitro using Enterococcus faecalis JH2-2, Lactococcus lactis Bu2, and Listeria innocua L19.
- Nucleotide sequencing of the 50,237 base pair plasmid pRE25 was conducted.
- Analysis of resistance genes and genes involved in conjugative transfer was performed.
Main Results:
- Plasmid pRE25 successfully transferred resistances to kanamycin, neomycin, streptomycin, clindamycin, lincomycin, azithromycin, clarithromycin, erythromycin, roxithromycin, tylosin, chloramphenicol, and nourseothricin sulfate.
- pRE25 contains genes for chloramphenicol acetyltransferase (cat) and 23S ribosomal RNA methyl transferase (ermB), identical to those in plasmid pIP501.
- Aminoglycoside resistance genes are tandemly arranged, similar to transposon Tn5405, and pRE25 shares a large segment with pIP501, linked by insertion elements.
Conclusions:
- pRE25 is the largest fully sequenced conjugative multiresistance plasmid identified in enterococci to date.
- The plasmid harbors resistance genes also found in various pathogenic bacteria, highlighting potential for spread.
- pRE25 demonstrates that enterococci from fermented foods actively participate in molecular communication across bacterial communities.
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