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Updated: Aug 30, 2026

Multi-Gene Single Nucleotide Polymorphism Detection in Gastric Cancer Based on Ion Semiconductor Sequencing Platform
Published on: May 10, 2024
Decreased abundance of trefoil factor 1 transcript in the majority of gastric carcinomas
Andrew D Beckler1, James K Roche, Jeffrey C Harper
1Department of Medicine, University of Virginia Health System, Charlottesville, Virginia 22908, USA.
Background:
Gastric carcinoma is one of the leading causes of cancer-related death worldwide, but the mechanisms underlying its development and progression still remain largely uncharacterized. As loss of trefoil factor 1 (TFF1) expression leads to neoplastic growth in the antropyloric mucosa of mice, the authors sought to comprehensively study the human TFF1 gene in primary gastric carcinomas.
Methods:
The authors studied the human TFF1 gene in primary gastric carcinomas and normal gastric mucosa at the DNA, RNA, and protein levels through DNA sequencing, quantitative real-time reverse transcriptase-polymerase chain reaction, and immunohistochemistry.
Results:
Strikingly, TFF1 mRNA expression was significantly decreased in all 37 gastric carcinomas studied compared with normal gastric mucosa. Furthermore, six tumor/normal pairs with available histologic samples demonstrated a marked decrease in protein expression in tumor samples. Screening of the entire TFF1 coding region in a panel of 42 human gastric tumors did not reveal any somatic mutations, although a few rare germline sequence variants were identified.
Conclusions:
These findings demonstrated a significant decrease in the TFF1 transcript in the majority of human gastric carcinomas along with a corresponding reduction in protein expression, both of which occurred in the absence of gene mutation. Dysregulation of TFF1 expression at the transcript level was a critical event in the development of most gastric carcinomas.
Insights
Trefoil factor 1 (TFF1) gene expression significantly decreases in most gastric carcinomas, impacting protein levels. This transcript-level dysregulation is a critical event in gastric cancer development, independent of gene mutation.
Area of Science:
- Oncology
- Molecular Biology
- Gastroenterology
Background:
- Gastric carcinoma is a major global cancer-related mortality cause.
- Mechanisms of gastric cancer development and progression are not fully understood.
- Loss of trefoil factor 1 (TFF1) expression in mice induces neoplastic growth.
Purpose of the Study:
- To comprehensively investigate the human TFF1 gene in primary gastric carcinomas.
- To determine the role of TFF1 in gastric cancer pathogenesis.
Main Methods:
- Analysis of TFF1 gene at DNA, RNA, and protein levels in gastric tumors and normal mucosa.
- Techniques included DNA sequencing, quantitative real-time reverse transcriptase-polymerase chain reaction (qRT-PCR), and immunohistochemistry.
Main Results:
- TFF1 mRNA expression was significantly reduced in all 37 gastric carcinomas compared to normal mucosa.
- Protein expression of TFF1 was markedly decreased in tumor samples.
- No somatic mutations in the TFF1 coding region were found in 42 gastric tumors; rare germline variants were identified.
Conclusions:
- A significant decrease in TFF1 transcript and corresponding protein reduction occurs in most gastric carcinomas.
- This downregulation happens without TFF1 gene mutation.
- TFF1 expression dysregulation at the transcript level is critical in gastric carcinoma development.
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