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Updated: Aug 30, 2026

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
Repair of and checkpoint response to topoisomerase I-mediated DNA damage
Yves Pommier1, Christophe Redon, V Ashutosh Rao
1Laboratory of Molecular Pharmacology, Center for Cancer Research, National Cancer Institute/NIH, Building 37, Room 5068, Bethesda, MD 20892-4255, USA. pommier@nih.gov
Abstract:
Topoisomerase I (Top1) catalyzes two transesterification reactions: single-strand DNA cleavage and religation that are normally coupled for the relaxation of DNA supercoiling in transcribing and replicating chromatin. A variety of endogenous DNA modifications, potent anticancer drugs and carcinogens uncouple these two reactions, resulting in the accumulation of Top1 cleavage complexes. Top1 cleavage complexes damage DNA and kill cells by generating replication-mediated DNA double-strand breaks (DSBs) and by stalling transcription complexes. The repair of Top1-mediated DNA lesions involves integrated pathways that are conserved from yeasts to humans. Top1-mediated DNA damage and cell cycle checkpoint responses can be studied biochemically and genetically in yeast and human cells with known genetic defects. Defects in these repair/checkpoint pathways, which promote tumor development, explain, at least in part, the selectivity of camptothecins and other Top1 inhibitors for cancer cells.
Insights
Topoisomerase I (Top1) is crucial for DNA relaxation but can cause DNA damage when its functions are disrupted. Understanding Top1 cleavage complexes and their repair is key to cancer therapy selectivity.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
- Cancer Research
Background:
- Topoisomerase I (Top1) is essential for managing DNA supercoiling during transcription and replication.
- Certain DNA modifications, drugs, and carcinogens can disrupt the coupled cleavage and religation reactions of Top1.
- This disruption leads to the formation of Top1 cleavage complexes, which pose a threat to genomic integrity.
Purpose of the Study:
- To elucidate the mechanisms by which Top1 cleavage complexes damage DNA.
- To investigate the conserved repair pathways for Top1-mediated DNA lesions.
- To understand the role of DNA repair and checkpoint pathways in cellular responses to Top1 inhibition.
Main Methods:
- Biochemical analyses of Topoisomerase I activity and DNA cleavage complexes.
- Genetic studies in yeast and human cell lines with defined genetic defects.
- Investigation of DNA double-strand break (DSB) formation and transcription stalling.
Main Results:
- Top1 cleavage complexes induce DNA damage by generating replication-mediated DSBs and stalling transcription.
- Integrated repair and checkpoint pathways, conserved across species, are involved in resolving Top1-mediated DNA lesions.
- Defects in these repair/checkpoint pathways contribute to tumor development and influence the efficacy of Top1 inhibitors.
Conclusions:
- Topoisomerase I inhibition can lead to significant DNA damage and cell death.
- The cellular response to Top1-mediated DNA damage relies on conserved repair and checkpoint mechanisms.
- Understanding these pathways is critical for explaining the selective toxicity of Top1 inhibitors, such as camptothecins, in cancer cells.
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