Functional analysis of the human Sprouty2 gene promoter

Wei Ding1, Saverio Bellusci, Wei Shi

  • 1Childrens Hospital Los Angeles Research Institute, Department of Pediatric Surgery, USC Keck School of Medicine, Los Angeles, CA 90027, USA.

Gene
|December 4, 2003
PubMed

Insights

The human Sprouty2 (hSpry2) gene promoter was characterized, revealing a proximal 0.4-kb region essential for high basal transcription. Multiple transcription factors bind this region to control hSpry2 expression during development.

Area of Science:

  • Molecular Biology
  • Developmental Biology
  • Genetics

Background:

  • Sprouty2 negatively regulates fibroblast growth factor signaling, crucial for embryonic development.
  • Murine Sprouty2 gene expression is temporally and spatially restricted in the developing lung.

Purpose of the Study:

  • To elucidate the molecular mechanisms governing human Sprouty2 (hSpry2) gene transcription.
  • To characterize the promoter region of the hSpry2 gene.

Main Methods:

  • Genomic organization and transcription start site mapping of hSpry2 using 5'-rapid amplification of cDNA ends.
  • Cloning and functional analysis of the 5'-flanking region, including truncation analysis of the promoter.
  • Electrophoretic mobility shift assays (EMSA) to confirm transcription factor binding.

Main Results:

  • A 4-kb 5'-flanking sequence exhibits promoter activity.
  • Distal upstream regions contain context-specific suppressor activity.
  • A proximal 0.4-kb region contains all elements for strong basal transcription, including an initiator element but lacking TATA/CAAT boxes.
  • Multiple cis-acting elements (AP2, CREB, SP1, Ets-1) in the proximal region bind specific nuclear proteins.

Conclusions:

  • The proximal 0.4-kb region of the hSpry2 promoter is critical for high basal expression.
  • Multiple transcription factors binding to the proximal promoter control hSpry2 expression.
  • This is the first promoter study of a mammalian Sprouty gene, providing insights into its transcriptional regulation.

Related Concept Videos

The Eukaryotic Promoter Region02:40

The Eukaryotic Promoter Region

The eukaryotic promoter region is a segment of DNA located upstream of a gene. It contains an RNA polymerase binding site, a transcription start site, and several cis-regulatory sequences.  The proximal promoter region is located in the vicinity of the gene and has cis-regulatory sequences and the core promoter. The core promoter is the binding site for RNA polymerase and is usually located between -35 and +35 nucleotides from the transcription start site. The distal promoter regions are...
The Eukaryotic Promoter Region02:40

The Eukaryotic Promoter Region

The eukaryotic promoter region is a segment of DNA located upstream of a gene. It contains an RNA polymerase binding site, a transcription start site, and several cis-regulatory sequences.  The proximal promoter region is located in the vicinity of the gene and has cis-regulatory sequences and the core promoter. The core promoter is the binding site for RNA polymerase and is usually located between -35 and +35 nucleotides from the transcription start site. The distal promoter regions are...
Gene Regulation During Sporulation01:17

Gene Regulation During Sporulation

Sporulation is a complex developmental process that allows certain Gram-positive bacteria, such as Bacillus subtilis and Clostridium species, to survive extreme environmental conditions. This process is tightly regulated by a series of signaling cascades and transcriptional controls, ensuring the formation of a highly resistant endospore.Sporulation is triggered by unfavorable conditions, such as nutrient depletion, and is governed by a phosphorelay system. One of the sensor kinases, such as...
RNA Polymerase II Accessory Proteins02:36

RNA Polymerase II Accessory Proteins

Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
Regulation of Expression at Multiple Steps01:23

Regulation of Expression at Multiple Steps

The gene expression in cells is regulated at different stages: (i) transcription, (ii) RNA processing, (iii) RNA localization, and (iv) translation. Transcriptional regulation is mediated by regulatory proteins such as transcription factors, activators, or repressors—these control gene expression by initiating or inhibiting the transcription of genes. Once a precursor or pre-mRNA is produced, it undergoes post-transcriptional modification, including 5' capping, splicing, and the addition of a...
Prokaryotic Transcriptional Activators and Repressors01:58

Prokaryotic Transcriptional Activators and Repressors

The organization of prokaryotic genes in their genome is notably different from that of eukaryotes. Prokaryotic genes are organized, such that the genes for proteins involved in the same biochemical process or function are located together in groups. This group of genes, along with their regulatory elements, are collectively known as an operon. The functional genes in an operon are transcribed together to give a single strand of mRNA known as polycistronic mRNA.
Transcription of prokaryotic...