Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

EMMA: a platform for consistent storage and efficient analysis of microarray data.

Michael Dondrup1, Alexander Goesmann, Daniela Bartels

  • 1Center for Genome Research, Bielefeld University, D-33594 Bielefeld, Germany.

Journal of Biotechnology
|December 4, 2003
PubMed
Summary
This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Predicted bacterial uRBSs reveal translational coupling and ribosome-mediated RBS occlusion as gene-controlling mechanisms.

microLife·2026
Same author

Generative models for antimicrobial peptide design: auto-encoders and beyond.

BioData mining·2026
Same author

Impact of microbial consortia and fertilization regimes on the soil microbiome in maize field trials.

Scientific reports·2026
Same author

Towards FAIR and federated data ecosystems for interdisciplinary research.

PLoS computational biology·2026
Same author

Binding of Glycyl-tRNA synthetase to Mengovirus RNA stimulates translation.

Nucleic acids research·2026
Same author

PARANOiD: Pipeline for Automated Read ANalysis of iCLIP Data.

Bioinformatics (Oxford, England)·2025
Same journal

High-level De novo Biosynthesis of Plant-Derived Pinosylvin in Yarrowia lipolytica via Metabolic Engineering and Surfactant-Mediated Fermentation.

Journal of biotechnology·2026
Same journal

The effect of reduced graphene oxide in chitosan-based nanoparticles on the enzymatic properties of the immobilized enzyme.

Journal of biotechnology·2026
Same journal

High-level biosynthesis of gastrodin in engineered Escherichia coli.

Journal of biotechnology·2026
Same journal

From plasmid sequence to process design: A computational analysis of metabolism in the context of plasmid DNA manufacturing.

Journal of biotechnology·2026
Same journal

Development of an inducible cellobiohydrolase promoter and its application for enhancing the production of ganoderic acids in Ganoderma lingzhi.

Journal of biotechnology·2026
Same journal

Malic acid and allied exogenous chemicals induces desaturase gene expression and elevates PUFA production in marine microalgae Isochrysis sp.

Journal of biotechnology·2026
See all related articles

The EMMA platform offers an open-source solution for storing and analyzing high-throughput microarray data. It automates data processing and integrates with other data sources for comprehensive analysis.

Area of Science:

  • Bioinformatics
  • Computational Biology
  • Genomics

Background:

  • Microarray experiments are high-throughput techniques generating large, complex datasets.
  • Managing and analyzing these datasets requires specialized tools for efficiency and accuracy.

Purpose of the Study:

  • To introduce the open-source EMMA platform for microarray data management and analysis.
  • To provide automated data processing pipelines and a modular architecture for extensibility.

Main Methods:

  • Implementation of the EMMA (Expression Microarray Management and Analysis) open-source platform.
  • Development of automated pipelines for data processing and analysis.
  • Integration capabilities with external data sources, such as genome annotation systems.

Related Experiment Videos

Main Results:

  • EMMA enables efficient storage and analysis of large microarray datasets.
  • The platform offers automated data processing and detailed reporting on experimental data.
  • Its modular design allows for easy extension and integration with other biological databases.

Conclusions:

  • EMMA provides a robust and extensible solution for managing and analyzing microarray data.
  • The platform facilitates comprehensive data interpretation by integrating diverse data sources.
  • Open-source accessibility promotes wider adoption and collaborative development in bioinformatics research.