Related Experiment Video
Updated: Aug 29, 2026

Growing a Cystic Fibrosis-Relevant Polymicrobial Biofilm to Probe Community Phenotypes
Published on: April 19, 2024
Improved outcomes associated with limiting identification of Candida spp. in respiratory secretions
Joan Barenfanger1, Pushpalatha Arakere, Rafael Dela Cruz
1Laboratory Medicine, Memorial Medical Center, Springfield, Illinois 62781, USA. barenfanger.joan@mhsil.com
Abstract:
Pneumonia due to infection with Candida spp. is extremely rare even though these yeasts are commonly cultured from respiratory secretions. The diagnosis of pneumonia due to Candida spp. should be made only by demonstrating tissue invasion of a biopsy specimen. Physicians might misinterpret the presence of Candida spp. in respiratory secretions as being the etiological agent of pneumonia. This study describes the practice of limiting identification (ID) of rapidly growing yeasts (i.e., Candida spp.) in respiratory secretions and its impact on patients. Before November 2001, rapidly growing yeasts found in respiratory secretions were identified to the species level. After November, rapidly growing yeasts were reported as "yeasts, not Cryptococcus." The group of patients with respiratory secretions processed before November 2001 is called the full ID group (n = 267); the group with samples processed after that date is called the limited ID group (n = 77). Full ID patients had an average length of hospital stay of 12.1 days/patient; that of limited ID patients was 10.1 days/patient, a decrease of 2 days/patient (P = 0.02). The full ID patients had an average cost of 9,407 dollars/patient; that of limited ID patients was 6,973 dollars/patient, a decrease of 2,434 dollars/patient (P = 0.03). Antifungal medications were used in 103 of 267 (39%) full ID patients and in 16 of 77 (21%) limited ID patients, a decrease of 18% (P = 0.004). Limited ID patients had a mortality rate of 14.3%; that of full ID patients was 18.7%, a decrease of 4.4% (P = 0.37). This policy of limiting yeast ID did not impair the diagnosis of pneumonia. Rather, decreases in lengths of stay, costs, and administration of unnecessary antifungal therapy were observed after instituting this policy.
Insights
Limiting the identification of Candida yeast in respiratory samples reduced hospital costs and unnecessary antifungal use. This practice did not negatively impact patient diagnosis or mortality rates for pneumonia.
Area of Science:
- Medical Mycology
- Clinical Microbiology
- Infectious Diseases
Background:
- Candida species are frequently found in respiratory secretions but rarely cause pneumonia.
- Misinterpretation of Candida in secretions can lead to incorrect pneumonia diagnosis and treatment.
- Tissue invasion is the definitive diagnostic criterion for invasive candidiasis.
Purpose of the Study:
- To evaluate the impact of a policy limiting the identification (ID) of rapidly growing yeasts, specifically Candida species, in respiratory secretions.
- To assess the effect of this policy on patient outcomes, including length of hospital stay, costs, antifungal use, and mortality.
Main Methods:
- A retrospective study comparing two groups of patients based on yeast identification practices before and after November 2001.
- Full ID group: Rapidly growing yeasts identified to species level (n=267).
- Limited ID group: Rapidly growing yeasts reported as "yeasts, not Cryptococcus" (n=77).
Main Results:
- The limited ID group showed a significant decrease in average length of hospital stay (10.1 vs 12.1 days, P=0.02).
- Average cost per patient was significantly lower in the limited ID group ($6,973 vs $9,407, P=0.03).
- Antifungal medication use decreased by 18% (21% vs 39%, P=0.004) in the limited ID group.
Conclusions:
- Limiting yeast identification in respiratory secretions is a safe and cost-effective practice.
- This policy reduces unnecessary antifungal therapy without compromising pneumonia diagnosis or increasing mortality.
- Clinical laboratories can optimize resource allocation by implementing targeted yeast identification strategies.
Related Concept Videos
Respiratory Syncytial Virus Disease
Candidiasis
Cryptococcal Meningitis
