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Updated: Aug 29, 2026

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations
Published on: December 7, 2021
Structure and distribution of an unusual chimeric genetic element encoding macrolide resistance in phylogenetically
David J Banks1, Stephen F Porcella, Kent D Barbian
1Laboratory of Human Bacterial Pathogenesis, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Disease, National Institutes of Health, Hamilton, Montana 59840, USA.
Abstract:
The resistance of group A Streptococcus (GAS) to macrolide antibiotics is now a worldwide problem. Preliminary sequencing of the genome of an erythromycin-resistant serotype M6 clone that was responsible for a pharyngitis outbreak in Pittsburgh, Pennsylvania, was conducted to determine the structure of the genetic element containing the mefA gene, which encodes a macrolide efflux protein. The mefA gene is associated with a 58.8-kb chimeric genetic element composed of a transposon inserted into a prophage. This element also encodes a putative extracellular protein with a cell-wall anchoring motif (LPKTG) located at the carboxyterminus. The mefA element was present in phylogenetically diverse GAS strains isolated throughout the United States. Culture supernatants, prepared after mitomycin C treatment, of a strain representing the outbreak clone contained mefA element DNA in a DNAse-resistant form. Together, these data provide new information about the molecular genetic basis of macrolide resistance and dissemination in GAS strains.
Insights
Macrolide antibiotic resistance in Group A Streptococcus (GAS) is a global issue. A novel chimeric genetic element carrying the mefA gene, responsible for resistance, was identified and found in diverse GAS strains across the US.
Area of Science:
- Microbiology
- Genetics
- Molecular Biology
Background:
- Macrolide antibiotic resistance in Group A Streptococcus (GAS) presents a significant global health challenge.
- Understanding the genetic basis of this resistance is crucial for effective treatment strategies.
Purpose of the Study:
- To investigate the genomic structure of the genetic element responsible for macrolide resistance in a specific GAS clone.
- To determine the prevalence and dissemination of this resistance element in GAS strains.
Main Methods:
- Preliminary whole-genome sequencing of an erythromycin-resistant GAS clone.
- Analysis of the genetic element containing the mefA gene.
- Detection of the mefA element in diverse GAS isolates.
Main Results:
- Identified a 58.8-kb chimeric genetic element comprising a transposon within a prophage, carrying the mefA gene.
- The element also encodes a putative extracellular protein with a cell-wall anchoring motif.
- The mefA element was detected in phylogenetically diverse GAS strains nationwide.
- Extracellular DNA containing the mefA element was found in a resistant GAS strain.
Conclusions:
- The mefA gene, encoding a macrolide efflux protein, is part of a complex genetic element facilitating its spread.
- This element contributes to the molecular basis of macrolide resistance and its dissemination in GAS.
- The findings provide critical insights into the mechanisms driving antibiotic resistance in GAS.
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