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AnaBench: a Web/CORBA-based workbench for biomolecular sequence analysis.

Elarbi Badidi1, Cristina De Sousa, B Franz Lang

  • 1The Canadian Institute for Advanced Research, Program in Evolutionary Biology, Département de Biochimie, Université de Montréal, 2900, Boul, Edouard Montpetit, Montréal, QC H3T 1J4, Canada. me.badidi@umontreal.ca

BMC Bioinformatics
|December 18, 2003
PubMed
Summary
This summary is machine-generated.

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AnaBench streamlines bioinformatics analysis by minimizing technical effort for scientists and administrators. This interactive, web-based workbench easily integrates new tools for efficient gene identification and phylogenetic inference.

Area of Science:

  • Bioinformatics
  • Computational Biology

Background:

  • Bioinformatics tools are diverse, leading to technical challenges in data management and analysis procedures.
  • Scientists often dedicate significant effort to overcoming issues with data formats, storage, and parameter memorization.

Purpose of the Study:

  • To present AnaBench, an interactive, web-based bioinformatics analysis workbench.
  • To minimize technical effort for both users and administrators in bioinformatics data analysis.

Main Methods:

  • Designed and implemented a three-tier distributed architecture.
  • Utilized technologies such as CORBA middleware, Java, JDBC, and JSP.
  • Developed a CORBA server for database access to manage users, data, and applications.

Main Results:

Related Experiment Videos

  • AnaBench offers a streamlined, interactive environment for bioinformatics data analysis.
  • The workbench allows for easy incorporation of new bioinformatics tools.
  • Provides application-driven, data-driven, and protocol-driven analysis approaches.

Conclusions:

  • AnaBench is an efficient and intuitive bioinformatics environment.
  • A prototype is available online, with options for local network deployment.