Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics.

Wenming Zhao1, Jing Wang, Ximiao He

  • 1Beijing Genomics Institute (BGI), Chinese Academy of Sciences (CAS), Beijing Airport Industrial Zone-B6, Beijing 101300, China.

Nucleic Acids Research
|December 19, 2003
PubMed
Summary

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

PLANeT: Understanding and leveraging the genome of land plants for a sustainable future.

Cell·2026
Same author

Horizontal gene transfer and diploidy illuminate evolution and stress adaptation in oleaginous Scenedesmaceae (Chlorophyta).

Nature communications·2026
Same author

Recent Update on siRNA Therapeutics.

International journal of molecular sciences·2025
Same author

Chromosome-level genomes of two Bracteacoccaceae highlight adaptations to biocrusts.

Nature communications·2025
Same author

Comparative phylogenomics and phylotranscriptomics provide insights into the genetic complexity of nitrogen-fixing root-nodule symbiosis.

Plant communications·2023
Same author

Chemotherapy-induced weight gain in early-stage breast cancer: a prospective matched cohort study reveals associations with inflammation and gut dysbiosis.

BMC medicine·2023

The Beijing Genomics Institute developed the Rice Information System (BGI-RIS), an integrated resource for rice genome data and comparative analysis. This system aids in understanding rice genetics and related cereal crops.

Area of Science:

  • Genomics
  • Bioinformatics
  • Plant Science

Background:

  • Rice is a crucial global food staple and a model organism for cereal genome research.
  • The Beijing Genomics Institute (BGI) has extensive experience in sequencing and analyzing crop genomes.
  • There is a need for integrated resources to facilitate the application of rice genomic information.

Purpose of the Study:

  • To implement an integrated information resource and workbench for comparative genomic analysis of rice.
  • To provide a foundation for functional and evolutionary studies of rice and other cereal crops.
  • To make comprehensive rice genomic data accessible for research.

Main Methods:

  • Development of the Rice Information System (BGI-RIS).
  • Integration of genome information from Oryza sativa L. ssp. indica (sequenced by BGI) and ssp. japonica.

Related Experiment Videos

  • Assembly of indica (93-11) sequence contigs into scaffolds and anchoring to rice chromosomes.
  • Annotation of rice genomes for gene content, repetitive elements, gene duplications, and single nucleotide polymorphisms.

    • Main Results:

    • BGI-RIS provides an up-to-date, integrated resource for rice genomic information.
    • The system hosts curated genome data for both indica and japonica rice subspecies, along with EST sequences from other cereals.
    • Indica rice scaffolds are anchored to chromosomes, and genomes are annotated for various genetic features.
    • The platform systematically and graphically presents genomic data for comparative studies.

    Conclusions:

    • BGI-RIS serves as a foundational platform for comparative genomics in rice and related cereal crops.
    • The system facilitates deeper understanding of rice genome structure, function, and evolution.
    • Accessible and integrated genomic data through BGI-RIS supports future research in plant science.