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MaizeGDB, the community database for maize genetics and genomics.

Carolyn J Lawrence1, Qunfeng Dong, Mary L Polacco

  • 1Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011-3260, USA.

Nucleic Acids Research
|December 19, 2003
PubMed
Summary

MaizeGDB is a comprehensive database for maize genetics and genomics data, integrating information from previous databases. It offers tools for researchers to access sequence, stock, and variation data, and facilitates community interaction.

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Area of Science:

  • Genetics and Genomics
  • Bioinformatics
  • Plant Science

Background:

  • Existing maize databases were fragmented.
  • A centralized repository was needed for diverse maize data.

Purpose of the Study:

  • To establish MaizeGDB as a unified resource for maize genetic and genomic information.
  • To facilitate data access, stock ordering, and researcher collaboration.

Main Methods:

  • Integrated data from ZmDB and MaizeDB.
  • Developed a web-based interface for data navigation and analysis.
  • Implemented tools for ordering maize stocks and cloned sequences.

Main Results:

  • MaizeGDB serves as a central repository for maize sequence, stock, phenotype, genotypic, and karyotypic variation data.

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  • Provides contact information for over 2400 maize researchers.
  • Offers web-based tools for ordering stocks and sequences, with embedded analytical functions.

    • Conclusions:

    • MaizeGDB enhances accessibility and integration of maize genetic and genomic data.
    • It fosters collaboration within the expanding maize research community.
    • Ongoing development aims to include advanced web-based curation tools.