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NASCArrays: a repository for microarray data generated by NASC's transcriptomics service.

David J Craigon1, Nick James, John Okyere

  • 1The Nottingham Arabidopsis Stock Centre, Division of Plant Sciences, University of Nottingham, Sutton Bonington LE12 5RD, UK.

Nucleic Acids Research
|December 19, 2003
PubMed
Summary
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The National Arabidopsis Stock Centre (NASC) provides a microarray service for Arabidopsis thaliana research. Their NASCArrays database offers publicly accessible gene expression data and analysis tools for the scientific community.

Area of Science:

  • Plant Science
  • Genomics
  • Bioinformatics

Background:

  • The Arabidopsis thaliana research community requires accessible gene expression data.
  • Microarray technology provides a platform for large-scale transcriptome analysis.

Purpose of the Study:

  • To describe the Affymetrix GeneChip microarray service operated by NASC.
  • To introduce the NASCArrays database as a resource for Arabidopsis transcriptome data.
  • To facilitate data sharing and re-analysis within the research community.

Main Methods:

  • Operation of an Affymetrix GeneChip microarray service.
  • Development and maintenance of the NASCArrays database.
  • Implementation of data mining tools and text searching for data accessibility.

Related Experiment Videos

  • Annotation of data with sample preparation details.

    • Main Results:

    • Public availability of all microarray data produced by the NASC service.
    • Accessibility of data through text searching and data mining tools on NASCArrays.
    • Downloadable original Affymetrix data and MIAME-supportive annotations.
    • Integration with global databases for worldwide data sharing.

    Conclusions:

    • NASCArrays serves as a vital, coordinated resource for Arabidopsis transcriptome research.
    • The database promotes data transparency and re-use, supporting the Minimum Information About a Microarray Experiment (MIAME) guidelines.
    • Facilitation of global data sharing enhances collaborative research efforts in plant genomics.