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Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins
Published on: August 9, 2019
RanBP2/Nup358 provides a major binding site for NXF1-p15 dimers at the nuclear pore complex and functions in nuclear
Daniel Forler1, Gwénaël Rabut, Francesca D Ciccarelli
1EMBL, 69117 Heidelberg, Germany.
Abstract:
Metazoan NXF1-p15 heterodimers promote the nuclear export of bulk mRNA across nuclear pore complexes (NPCs). In vitro, NXF1-p15 forms a stable complex with the nucleoporin RanBP2/Nup358, a component of the cytoplasmic filaments of the NPC, suggesting a role for this nucleoporin in mRNA export. We show that depletion of RanBP2 from Drosophila cells inhibits proliferation and mRNA export. Concomitantly, the localization of NXF1 at the NPC is strongly reduced and a significant fraction of this normally nuclear protein is detected in the cytoplasm. Under the same conditions, the steady-state subcellular localization of other nuclear or cytoplasmic proteins and CRM1-mediated protein export are not detectably affected, indicating that the release of NXF1 into the cytoplasm and the inhibition of mRNA export are not due to a general defect in NPC function. The specific role of RanBP2 in the recruitment of NXF1 to the NPC is highlighted by the observation that depletion of CAN/Nup214 also inhibits cell proliferation and mRNA export but does not affect NXF1 localization. Our results indicate that RanBP2 provides a major binding site for NXF1 at the cytoplasmic filaments of the NPC, thereby restricting its diffusion in the cytoplasm after NPC translocation. In RanBP2-depleted cells, NXF1 diffuses freely through the cytoplasm. Consequently, the nuclear levels of the protein decrease and export of bulk mRNA is impaired.
Insights
The nucleoporin RanBP2 is crucial for mRNA export by anchoring NXF1 at the nuclear pore complex. Depleting RanBP2 impairs cell proliferation and mRNA export by causing NXF1 to diffuse into the cytoplasm.
Area of Science:
- Cell Biology
- Molecular Biology
- Genetics
Background:
- Nuclear export of bulk mRNA is mediated by NXF1-p15 heterodimers across nuclear pore complexes (NPCs).
- NXF1-p15 forms a complex with RanBP2/Nup358, a nucleoporin located on the NPC's cytoplasmic filaments, suggesting a role in mRNA export.
Purpose of the Study:
- To investigate the role of RanBP2 in mRNA export and NXF1 localization at the NPC.
- To determine if RanBP2 is essential for recruiting NXF1 to the NPC.
Main Methods:
- Depletion of RanBP2 in Drosophila cells using RNA interference.
- Analysis of cell proliferation, mRNA export efficiency, and protein localization (NXF1, other proteins) via microscopy and biochemical assays.
- Comparison with depletion of CAN/Nup214 to assess specificity.
Main Results:
- RanBP2 depletion inhibited cell proliferation and mRNA export.
- NXF1 localization at the NPC was reduced, with increased cytoplasmic presence.
- RanBP2 depletion did not affect general NPC function or CRM1-mediated export.
- Depletion of CAN/Nup214 also inhibited proliferation and mRNA export but did not alter NXF1 localization.
Conclusions:
- RanBP2 acts as a major binding site for NXF1 at the NPC's cytoplasmic filaments, preventing its diffusion.
- RanBP2 depletion leads to free diffusion of NXF1 in the cytoplasm, reducing nuclear levels and impairing bulk mRNA export.
- RanBP2 plays a specific, critical role in the nuclear export pathway of bulk mRNA.
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