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Updated: Feb 9, 2026

Manipulation and Analysis of Cell Cycle-Dependent Processes in Budding Yeast
Published on: September 26, 2025
1Biocenter of the University of Basel, CH-4056 Basel, Switzerland.
This study proposes that clathrin is involved in three distinct budding events in eukaryotic cells. Each event has unique features and functions. The first requires actin and is likely involved in plasma membrane budding. The second is used for transporting soluble hydrolases from the Golgi to the hydrolytic compartment. The third uses a tyrosine localization signal to concentrate membrane proteins and is proposed to occur on endosomes in yeast. The study suggests that this third step is used for retrieving membrane proteins back to the Golgi. The author also proposes an evolutionary scenario for the origin of polarized membranes in multicellular organisms. The hypothesis generates several testable predictions about the localization and function of each budding event.
Area of Science:
Background:
Clathrin is a well-known protein involved in vesicle formation during intracellular transport. While its function is broadly understood, the specific roles it plays in different budding events remain unclear. Some studies have shown clathrin's involvement in endocytosis and protein sorting, but the exact sequence of events and their conservation across species is not fully resolved. This uncertainty has led to questions about how clathrin contributes to polarized cell structures in multicellular organisms. Prior research has established clathrin's role in Golgi-to-endosome transport, but the mechanisms of distinct budding steps are not well characterized. The gap motivating this work is the lack of a unified framework for clathrin-dependent budding events. This paper aims to clarify the functional diversity of clathrin across eukaryotic cells. Understanding these steps could help explain how membrane proteins are sorted and localized in polarized cells.
Purpose Of The Study:
This study proposes a hypothesis about the existence of three distinct clathrin-dependent budding events in eukaryotic cells. The aim is to identify the unique features of each budding step and their potential evolutionary significance. By examining the role of clathrin in membrane trafficking, the paper seeks to clarify how these events contribute to cell polarity. The hypothesis is based on observations of clathrin's involvement in various transport processes. The study also explores how these mechanisms might have evolved to support the development of polarized membranes in multicellular organisms. The focus is on the functional differences between budding events and their conservation across species. The ultimate goal is to provide a framework for future experimental validation of these proposed mechanisms.
Main Methods:
The author uses a hypothesis-driven approach to propose three distinct clathrin-dependent budding events. The framework is based on existing knowledge of clathrin's role in vesicle formation and protein trafficking. The first budding step is associated with actin and involves the formation of vesicles at the plasma membrane. The second step is linked to the transport of soluble hydrolases from the Golgi to lysosomes or vacuoles. The third step is defined by the use of tyrosine localization signals to concentrate membrane proteins. The author draws on prior studies to support these proposed mechanisms. The framework is designed to be testable through experimental approaches in model organisms. The study does not rely on new data but synthesizes existing observations into a unified model. The proposed hypothesis includes predictions about the localization and function of each budding event.
Main Results:
The hypothesis proposes three distinct clathrin-dependent budding events with unique features. The first step requires actin and is likely involved in plasma membrane budding. The second step is used for transporting soluble hydrolases from the Golgi to the hydrolytic compartment. The third step uses a tyrosine localization signal to concentrate membrane proteins. The author suggests that this third step occurs on endosomes in yeast. This budding event is proposed to be involved in retrieving membrane proteins back to the Golgi. The model also includes evolutionary implications for the development of polarized membranes in multicellular organisms. The hypothesis generates several testable predictions about the localization and function of each budding step. These findings are based on the synthesis of existing observations and proposed mechanisms.
Conclusions:
The author concludes that three distinct clathrin-dependent budding events may be common to all eukaryotes. Each event has unique features that distinguish it from the others. The first step involves actin and plasma membrane budding. The second step is used for transporting soluble hydrolases from the Golgi. The third step uses a tyrosine localization signal and is proposed to occur on endosomes in yeast. The model suggests that this third step is involved in retrieving membrane proteins back to the Golgi. The hypothesis also proposes an evolutionary scenario for the origin of basolateral and apical plasma membranes in multicellular organisms. The author emphasizes the need for experimental validation of these proposed mechanisms. The framework provides a testable model for future research in membrane trafficking and cell polarity.
The first requires actin, the second transports hydrolases from the Golgi, and the third uses a tyrosine signal to concentrate membrane proteins.
The third event uses a tyrosine localization signal and is proposed to occur on endosomes in yeast.
Actin is proposed to be necessary for the first budding step at the plasma membrane.
The tyrosine signal is used to concentrate membrane proteins during the third budding event.
The third step is proposed to occur on endosomes and retrieve membrane proteins back to the Golgi.
The study proposes an evolutionary scenario for the origin of basolateral and apical membranes in multicellular organisms.