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Reverse Yeast Two-hybrid System to Identify Mammalian Nuclear Receptor Residues that Interact with Ligands and/or Antagonists
Published on: November 16, 2013
Ubc9 interacts with chicken ovalbumin upstream promoter-transcription factor I and represses receptor-dependent
S Kobayashi1, H Shibata, I Kurihara
1Department of Internal Medicine, School of Medicine, Keio University, 35 Shinanomachi, Shinjuku-ku, Tokyo 160-8582, Japan.
Abstract:
Chicken ovalbumin upstream promoter-transcription factors (COUP-TFs) are orphan receptors involved in regulation of neurogenesis and organogenesis. COUP-TF family members are generally considered to be transcriptional repressors and several mechanisms have been proposed to underlie this activity. To explore novel transcriptional coregulators for COUP-TFs, we used the COUP-TFI as bait in a yeast two-hybrid screen of an adrenocortical adenoma cDNA library. We have identified Ubc9, a class E2 conjugating enzyme of small ubiquitin-related modifier (SUMO)-1 as a COUP-TFI corepressor. Ubc9 interacts with COUP-TFI in yeast and in glutathione S-transferase pulldown and coimmunoprecipitation assays. Fluorescence imaging studies show that both Ubc9 and COUP-TFI are colocalized in the nuclei of transfected COS-1 cells. The C-terminal region of Ubc9 encoding amino acids 59-158 interacts with the C-terminus of COUP-TFI encoding amino acids 383-403, in which transcriptional repression domains are located. Mammalian one-hybrid assays utilizing a variety of Ubc9 fragments fused to Gal4 DNA-binding domain show that a Ubc9 fragment encoding amino acids 1-89 contains autonomous transferrable repression domain. Transfection of Ubc9 into COS-1 cells markedly enhances transcriptional repression by Gal4 DNA-binding domain-fused to COUP-TFI(155-423), but not by Gal4-COUP-TFI(155-388) which lacks a repressor domain. Coexpression of a C-terminal deletion mutant of Ubc9(1-58), which fails to interact with COUP-TFI, but retains a transcriptional repression domain, has no effect on Gal4-COUP-TFI-mediated repression activity. These findings indicate that interaction of Ubc9 with COUP-TFI is crucial for the corepressor function of Ubc9. Overexpression of Ubc9 similarly enhances COUP-TFI-dependent repression of the promoter activity of the bovine CYP17 gene encoding steroid 17alpha-hydroxylase. In addition, the C93S mutant of Ubc9, which abrogates SUMO-1 conjugation activity, continues to function as a COUP-TFI corepressor. Our studies indicate that Ubc9 functions as a novel COUP-TFI corepressor, the function of which is distinct from its SUMO-1 conjugating enzyme activity.
Insights
We discovered Ubc9 acts as a novel corepressor for Chicken ovalbumin upstream promoter-transcription factors (COUP-TFs), enhancing their gene-silencing activity. This function is independent of Ubc9's role in SUMO-1 conjugation.
Area of Science:
- Molecular Biology
- Cell Biology
- Genetics
Background:
- Chicken ovalbumin upstream promoter-transcription factors (COUP-TFs) are orphan receptors critical for neurogenesis and organogenesis.
- COUP-TF family members are primarily known as transcriptional repressors, with various mechanisms proposed for their activity.
Purpose of the Study:
- To identify novel transcriptional coregulators of COUP-TFs.
- To investigate the role of Ubc9 as a potential corepressor for COUP-TFI.
Main Methods:
- Yeast two-hybrid screen using COUP-TFI as bait.
- Glutathione S-transferase pulldown and coimmunoprecipitation assays.
- Fluorescence imaging, mammalian one-hybrid assays, and gene promoter activity analysis.
Main Results:
- Ubc9 was identified as a COUP-TFI corepressor, interacting with COUP-TFI in the nucleus.
- A Ubc9 fragment (amino acids 1-89) demonstrated an autonomous repression domain, crucial for enhancing COUP-TFI-mediated repression.
- Ubc9 enhanced COUP-TFI-dependent repression of the bovine CYP17 gene promoter, independent of its SUMO-1 conjugation activity.
Conclusions:
- Ubc9 functions as a novel corepressor for COUP-TFI, with interaction being critical for its function.
- This corepressor activity of Ubc9 is distinct from its canonical role as a SUMO-1 conjugating enzyme.
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