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Updated: Aug 14, 2026

Next Generation Sequencing for the Detection of Actionable Mutations in Solid and Liquid Tumors
Published on: September 20, 2016
Novel FLT3 point mutations within exon 14 found in patients with acute myeloid leukaemia
Derek L Stirewalt1, Soheil Meshinchi, Steven J Kussick
1Clinical Research Division, Fred Hutchinson Cancer Research Center, and Division of Oncology, University of Washington, Seattle, WA 98109, USA. dstirewa@fhcrc.org
Abstract:
Internal tandem duplications in FLT3 are the most common mutation in acute myeloid leukaemia (AML), with agarose gel electrophoresis of polymerase chain reaction products (PCR/agarose) being the screening method of choice for these mutations. As PCR/agarose screening does not detect small mutations, single-stranded conformational polymorphism analyses (PCR/SSCP) were used in an attempt to identify previously unrecognized point mutations in FLT3 exons 14 and 15 of 140 AML patients, using newly designed primers that anneal within intron sequences. Novel missense point mutations were found in exon 14, suggesting additional investigations should be performed in AML and other haematopoietic malignancies, using this sensitive technique.
Insights
Single-stranded conformational polymorphism analyses identified novel FLT3 point mutations in acute myeloid leukemia (AML) patients. This sensitive technique offers new avenues for investigating FLT3 mutations in hematologic malignancies.
Area of Science:
- Hematology
- Molecular Biology
- Oncology
Background:
- Internal tandem duplications (ITDs) in FLT3 are common in acute myeloid leukemia (AML).
- Current screening methods like PCR/agarose gel electrophoresis may miss smaller FLT3 mutations.
- Exons 14 and 15 of FLT3 are critical regions for mutation analysis.
Purpose of the Study:
- To identify previously unrecognized point mutations in FLT3 exons 14 and 15 in AML patients.
- To evaluate the utility of single-stranded conformational polymorphism analyses (PCR/SSCP) for detecting small FLT3 mutations.
- To explore the potential role of novel FLT3 mutations in AML and other hematologic malignancies.
Main Methods:
- PCR/SSCP analysis was employed using newly designed primers targeting intron sequences flanking FLT3 exons 14 and 15.
- A cohort of 140 AML patients was screened for FLT3 mutations.
- Sequencing and analysis of PCR products were performed to identify mutations.
Main Results:
- Novel missense point mutations were identified in exon 14 of the FLT3 gene.
- PCR/SSCP demonstrated sensitivity in detecting small mutations missed by standard PCR/agarose screening.
- The findings suggest a broader spectrum of FLT3 mutations in AML than previously recognized.
Conclusions:
- PCR/SSCP is a sensitive method for detecting small FLT3 point mutations in AML.
- Novel FLT3 mutations in exon 14 warrant further investigation in AML and other hematologic cancers.
- This technique can enhance the diagnostic and prognostic evaluation of hematologic malignancies.
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