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Updated: Aug 26, 2026

Prediction and Validation of Gene Regulatory Elements Activated During Retinoic Acid Induced Embryonic Stem Cell Differentiation
Published on: June 21, 2016
Selective LXXLL peptides antagonize transcriptional activation by the retinoid-related orphan receptor RORgamma
Shogo Kurebayashi1, Takeshi Nakajima, Seong-Chul Kim
1Cell Biology Section, Division of Intramural Research, National Institute of Environmental Sciences, National Institutes of Health, Research Triangle Park, NC 27709, USA.
Abstract:
The retinoid-related orphan receptor gamma (RORgamma) has been shown to function as a positive regulator of transcription in many cell lines. Transcriptional activation by nuclear receptors involves recruitment of co-activators that interact with receptors through their LXXLL motifs (NR box). In this study, we analyze the interaction of RORgamma with the co-activator SRC1 and use a series of LXXLL-containing peptides to probe for changes in the conformation of the co-activator interaction surface of the RORgamma LBD. We demonstrate that the H3-4/H12 co-activator interaction surface of RORgamma displays a selectivity for LXXLL peptides that is distinct from those of other nuclear receptors. LXXLL peptides that interacted with RORgamma efficiently antagonized RORgamma-mediated transcriptional activation. Mutations E502Q and Y500F in H12, and K334A, Q347A, and I348D in H3 and H4 of RORgamma, severely impact the recruitment of LXXLL peptides. The effects of these mutations are consistent with predictions made on the basis of the structure of the RORgamma(LBD) derived through homology modeling. These peptide antagonists provide a useful tool to analyze the conformation changes in the RORgamma(LBD) and to study RORgamma receptor signaling.
Insights
Retinoid-related orphan receptor gamma (RORgamma) interaction with co-activators was studied using LXXLL peptides. These peptides antagonized RORgamma activity and revealed distinct binding site conformations, aiding RORgamma signaling research.
Area of Science:
- Molecular biology
- Endocrinology
- Structural biology
Background:
- Retinoid-related orphan receptor gamma (RORgamma) is a nuclear receptor that regulates transcription.
- Nuclear receptor transcriptional activation depends on co-activator recruitment via LXXLL motifs.
- Understanding RORgamma's co-activator interaction is crucial for deciphering its regulatory mechanisms.
Purpose of the Study:
- To investigate the interaction between RORgamma and the co-activator SRC1.
- To analyze the RORgamma ligand-binding domain (LBD) co-activator interaction surface using LXXLL peptides.
- To identify specific amino acid residues critical for LXXLL peptide binding and RORgamma transcriptional activity.
Main Methods:
- Utilized a series of LXXLL-containing peptides to probe RORgamma LBD conformation.
- Employed site-directed mutagenesis to alter key residues in the RORgamma LBD.
- Performed homology modeling to predict the structure of the RORgamma LBD.
Main Results:
- RORgamma's H3-4/H12 surface exhibits unique selectivity for LXXLL peptides compared to other nuclear receptors.
- LXXLL peptides that bind RORgamma effectively antagonize its transcriptional activity.
- Specific mutations (E502Q, Y500F, K334A, Q347A, I348D) significantly impair LXXLL peptide recruitment.
Conclusions:
- The identified LXXLL peptide antagonists are valuable tools for studying RORgamma LBD conformation.
- Mutational analysis supports homology modeling predictions of the RORgamma LBD structure.
- This research provides insights into RORgamma receptor signaling and potential therapeutic targeting.
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