Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

ARB: a software environment for sequence data.

Wolfgang Ludwig1, Oliver Strunk, Ralf Westram

  • 1Lehrstuhl für Mikrobiologie, Technische Universität München, D-853530 Freising, Germany. ludwig@mikro.biologie.tu-muenchen.de

Nucleic Acids Research
|February 27, 2004
PubMed
Summary

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Targeting of MEK and Autophagy in Pancreatic Adenocarcinoma and Analysis of Treatment Sensitivity in Preclinical and Clinical Models: MEKiAUTO.

JCO precision oncology·2026
Same author

Albuminuria drives hyperlipidemia in patients with Alport syndrome.

Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association·2026
Same author

German Clinical Practice Guideline on Microhematuria in Children and Young Adults: Evaluating Early Detection of Kidney Disease.

Kidney international reports·2026
Same author

Update on Alport Syndrome: The Report of the 2024 International Workshop on Alport Syndrome.

Kidney international reports·2026
Same author

Comparison of the flexural strength and microstructure of 3D printed and milled mono- and multilayer zirconia.

Journal of the mechanical behavior of biomedical materials·2026
Same author

Genetic affinities between the ancient Greek colony of Amvrakia and its metropolis.

Genome biology·2026
Same journal

Correction to 'New origin firing is inhibited by APC/CCdh1 activation in S-phase after severe replication stress'.

Nucleic acids research·2026
Same journal

VeloRM: disentangling pre- and post-splicing RNA modification dynamics at single-cell resolution.

Nucleic acids research·2026
Same journal

Accessibility of telomeric overhangs to stabilizing small-molecule ligands.

Nucleic acids research·2026
Same journal

Multivalent interactions mediate SNAIL transcription factor stimulation of the nucleosome deacetylase activity of the CoREST complex.

Nucleic acids research·2026
Same journal

Genome-wide mapping of DNA G-quadruplexes in Trypanosoma brucei chromatin reveals enrichment in coding regions and transcription start sites.

Nucleic acids research·2026
Same journal

Correction to 'The Gene Ontology knowledgebase in 2026'.

Nucleic acids research·2026
See all related articles
This summary is machine-generated.

The ARB software package offers integrated tools for managing and analyzing nucleic and amino acid sequence data. It supports phylogenetic analysis and hybridization probe design, benefiting researchers globally.

Area of Science:

  • Bioinformatics
  • Computational Biology
  • Molecular Biology

Background:

  • The ARB project has developed a comprehensive software package for sequence database maintenance and analysis over the past decade.
  • Initially designed for ribosomal RNA data, the ARB package is versatile and applicable to any nucleic and amino acid sequence data.

Purpose of the Study:

  • To present the ARB program package, a collection of interacting software tools for sequence data management and analysis.
  • To highlight the package's capabilities, including a central database, graphical user interface, and tools for various analytical tasks.

Main Methods:

  • Utilizes a central database for processed sequence data (aligned primary structures).
  • Integrates a graphical user interface for controlling diverse software tools.

Related Experiment Videos

  • Incorporates tools for data import/export, sequence alignment, structure editing, phylogenetic analysis, and probe design.

    • Main Results:

    • The ARB package provides a unified environment for sequence database maintenance and analysis.
    • It facilitates data access and visualization through an integrated phylogenetic tree.
    • The software includes a wide array of analytical components, from alignment to probe design.

    Conclusions:

    • The ARB package is a powerful and versatile tool for sequence data analysis in molecular biology.
    • Its user-friendly interface and comprehensive functionalities make it valuable for numerous research groups worldwide.
    • The continuous development and broad adoption underscore its significance in bioinformatics.